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INDEXED
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AlignmentFile
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IGVFFI4926QIFF
IGVFFI4926QIFF
released
validated
Json view
File Set
IGVFDS3609QWUZ
(ATAC-seq: alignments)
Summary
GRCh38 filtered alignments
Analysis Step Version
/analysis-step-versions/c95d766a-a900-4694-8065-e12651f618ba/
File Format
bam
Content Type
alignments
Content Summary
filtered alignments
Aliases
charles-gersbach:cd8-tcells-atac-seq-chronic-activation-gfp-bam-rep1
md5sum
abec4348e1a8763cfe8f6d5b49ef4fae
Content MD5sum
2ece370b80d9f1b6aa2d85a370237837
File Size
1.5 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/SCM-C69-rep1.masked.dups_marked.bam
Alignment Details
Reference Files
IGVFFI0653VCGH
Filtered
True
Samples
2 items
Accession
Type
Sample Terms
Summary
IGVFSM3805WZUU
PrimaryCell
CD8-positive, alpha-beta memory T cell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
IGVFSM6508DFUL
PrimaryCell
CD8-positive, alpha-beta memory T cell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
Files This File Derives From
2 items
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
IGVFFI1651AXPZ
IGVFDS3810SJRN
fastq
reads
Charles Gersbach, Duke
1.2 GB
validated
IGVFFI7728DHLL
IGVFDS3810SJRN
fastq
reads
Charles Gersbach, Duke
1.3 GB
validated
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI4762WUEH
tsv
peak quantifications
GRCh38 peak quantifications
Charles Gersbach, Duke
2.2 MB
validated
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke