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IGVFFI4926QIFF

released
validated
File Set
IGVFDS6344XBAV(ATAC-seq: alignments, fold change over control, peak quantifications)
Summary
GRCh38 filtered alignments
Analysis Step Version
/analysis-step-versions/c95d766a-a900-4694-8065-e12651f618ba/
File Format
bam
Content Type
alignments
Content Summary
filtered alignments
Aliases
charles-gersbach:cd8-tcells-atac-seq-chronic-activation-gfp-bam-rep1
md5sum
abec4348e1a8763cfe8f6d5b49ef4fae
Content MD5sum
2ece370b80d9f1b6aa2d85a370237837
File Size
1.5 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/SCM-C69-rep1.masked.dups_marked.bam
Checkfiles Version
Legacy version of checkfiles

Alignment Details

Reference Files
Filtered
True
Genome Assembly
GRCh38

Samples

4 items
Sample Terms
Summary
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library

Files This File Derives From

2 items
fastq
reads
Charles Gersbach, Duke
1.2 GB
validated
fastq
reads
Charles Gersbach, Duke
1.3 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
peak quantifications
GRCh38 peak quantifications
Charles Gersbach, Duke
2.2 MB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke