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IGVFFI4382XXOK

released
validated
File Set
IGVFDS4606DSTJ(ATAC-seq: alignments)
Summary
GRCh38 filtered alignments
Analysis Step Version
/analysis-step-versions/c95d766a-a900-4694-8065-e12651f618ba/
File Format
bam
Content Type
alignments
Content Summary
filtered alignments
Aliases
charles-gersbach:alignment-set-bulk-atac-chir4um-ipsc-cm-rep3
md5sum
1d796844a98948a88384603983372c25
Content MD5sum
eebfed318a2f949274795cc919cb41ff
File Size
3.5 GB
Submitted File Name
/datacommons/gersbachlab/Ruhi/IGVFdatasubmission/TaylorHiCAR/ATAC/CHRIR4uM_3.masked.dups_marked.bam

Alignment Details

Reference Files
Filtered
True

Samples

6 items
Sample Terms
Summary
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens

Files This File Derives From

2 items
fastq
reads
Charles Gersbach, Duke
3.4 GB
validated
fastq
reads
Charles Gersbach, Duke
3.6 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
peak quantifications
GRCh38 peak quantifications
Charles Gersbach, Duke
4.3 MB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke