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INDEXED
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AlignmentFile
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IGVFFI3922QQPV
IGVFFI3922QQPV
released
validated
Json view
File Set
IGVFDS4430NOFL
(knockout RNA-seq: transcriptome alignments)
Summary
GRCh38 filtered transcriptome alignments
Analysis Step Version
/analysis-step-versions/7298947c-9675-4de2-933a-642bde562751/
File Format
bam
Content Type
transcriptome alignments
Content Summary
filtered transcriptome alignments
Aliases
charles-gersbach:cd8-tcells-rna-seq-cas-ko-znf217-bam-rep3
md5sum
daeaf56b772d4ff25bd7534c07299939
Content MD5sum
0ca110bb6f1861fe617ab9545fc8c6b4
File Size
2.3 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/cd8.rnaseq.pSM73.znf217.d3.star2.Aligned.out.sorted.bam
Alignment Details
Reference Files
IGVFFI0653VCGH
Filtered
True
Samples
3 items
Accession
Type
Sample Terms
Summary
IGVFSM1311HWOF
PrimaryCell
CD8-positive, alpha-beta memory T cell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
IGVFSM5367RVVU
PrimaryCell
CD8-positive, alpha-beta memory T cell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
IGVFSM5949AWIH
PrimaryCell
CD8-positive, alpha-beta memory T cell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
Files This File Derives From
2 items
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
IGVFFI0834TQEW
IGVFDS3198NMHN
fastq
reads
Charles Gersbach, Duke
2.4 GB
validated
IGVFFI3623WAYN
IGVFDS3198NMHN
fastq
reads
Charles Gersbach, Duke
2.6 GB
validated
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI7900YIDY
tsv
transcript quantifications
GRCh38 transcript quantifications
Charles Gersbach, Duke
549 KB
validated
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke