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IGVFFI3872NBHI

released
validated
File Set
IGVFDS2500WRRQ(single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq))
Summary
GRCm39 unfiltered alignments
Analysis Step Version
/analysis-step-versions/39c0498d-91f6-42de-8896-2fab1403f032/
File Format
bam
Content Type
alignments
Content Summary
unfiltered alignments
Aliases
buenrostro-bernstein:IGVFDS2500WRRQ_bam
md5sum
66b1de7329a591df325b1446b0eef020
Content MD5sum
e47f1cc934a51ea895016d6f0e40e04b
File Size
20 GB
Submitted File Name
gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/1d455597-b132-452b-8b75-bf2db8c76d2e/single_cell_pipeline/37c6f33e-77c3-4424-9360-fe4be37474a2/call-atac/wf_atac/7a2fe1c0-7261-4735-aaa4-246d3f946892/call-generate_bam/SS-PKR-433.bam
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad

Alignment Details

Reference Files
Genome Assembly
GRCm39

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 433)

Files This File Derives From

15 items
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
fastq
reads
Jason Buenrostro, Broad
7.7 GB
validated
fastq
reads
Jason Buenrostro, Broad
9.5 GB
validated
fastq
reads
Jason Buenrostro, Broad
11 GB
validated
fastq
reads
Jason Buenrostro, Broad
7.7 GB
validated
fastq
reads
Jason Buenrostro, Broad
11 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
bai
index
index of IGVFFI3872NBHI
Jason Buenrostro, Broad
5.2 MB
validated