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IGVFFI3680NTHN

released
validated
File Set
IGVFDS4582MPNU(RNA-seq: fold change over control, transcript quantifications, transcriptome alignments)
Summary
GRCh38 filtered transcriptome alignments
Analysis Step Version
/analysis-step-versions/7298947c-9675-4de2-933a-642bde562751/
File Format
bam
Content Type
transcriptome alignments
Content Summary
filtered transcriptome alignments
Aliases
charles-gersbach:cd8-tcells-rna-seq-chronic-activation-gfp-bam-rep3
md5sum
586381e22211f40a4401ccccf7491b9b
Content MD5sum
0acfe61292203543253f27fd9c4e3bcd
File Size
1.6 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/cd8-pSM7-IL-2-D3.star2.Aligned.out.sorted.bam
Checkfiles Version
Legacy version of checkfiles

Alignment Details

Reference Files
Filtered
True
Genome Assembly
GRCh38

Samples

6 items
Sample Terms
Summary
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library

Files This File Derives From

2 items
fastq
reads
Charles Gersbach, Duke
1.8 GB
validated
fastq
reads
Charles Gersbach, Duke
1.8 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
transcript quantifications
GRCh38 transcript quantifications
Charles Gersbach, Duke
505 KB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke