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IGVFFI3650PMFD

released
validated
File Set
IGVFDS4582MPNU(RNA-seq integrating a control transduction expression vector library and an expression vector library of BATF3)
Summary
GRCh38 filtered transcriptome alignments
Analysis Step Version
/analysis-step-versions/7298947c-9675-4de2-933a-642bde562751/
File Format
bam
Content Type
transcriptome alignments
Content Summary
filtered transcriptome alignments
Aliases
charles-gersbach:cd8-tcells-rna-seq-chronic-activation-gfp-bam-rep1
md5sum
27dab26d6ce0eb6d69996f0249cf7012
Content MD5sum
60b6305e40e17ed771b0a270b0277fe3
File Size
1.6 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/cd8-pSM7-IL-2-D1.star2.Aligned.out.sorted.bam
Checkfiles Version
Legacy version of checkfiles
Attribution
Charles Gersbach, Duke

Alignment Details

Reference Files
Filtered
True
Genome Assembly
GRCh38

Samples

6 items
Sample Terms
Summary
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead for 14 days, transduced (lentivirus) with a expression vector library
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead for 14 days, transduced (lentivirus) with a expression vector library
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead for 14 days, transduced (lentivirus) with a expression vector library
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead for 14 days, transduced (lentivirus) with a expression vector library
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead for 14 days, transduced (lentivirus) with a expression vector library
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead for 14 days, transduced (lentivirus) with a expression vector library

Files This File Derives From

2 items
fastq
reads
Charles Gersbach, Duke
1.7 GB
validated
fastq
reads
Charles Gersbach, Duke
1.8 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
transcript quantifications
GRCh38 transcript quantifications
Charles Gersbach, Duke
505 KB
validated