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IGVFFI3417STJG

released
validated
File Set
IGVFDS6954KEHC(SUPERSTARR: alignments, index, reporter genomic variant effects, reporter variants)
Summary
GRCh38 unfiltered alignments
Analysis Step Version
/analysis-step-versions/cfaab400-714a-45b5-9800-3ff6f9c929c2/
File Format
bam
Content Type
alignments
Content Summary
unfiltered alignments
Aliases
tim-reddy:starr-seq-rna-bam-k562-P008
md5sum
23977ecfddc1d19b38158264edba375d
Content MD5sum
f5e6d5b165f500efaecb8cc99be1b045
File Size
12 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_1_STARR_seq/K562.starrseq.rna.pool8.f3q10.sorted.with_umis.dups_marked.bam
Checkfiles Version
v14
Attribution
Tim Reddy, Duke

Alignment Details

Reference Files
Genome Assembly
GRCh38

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line transfected with a reporter library

Files This File Derives From

2 items
fastq
reads
Tim Reddy, Duke
13 GB
validated
fastq
reads
Tim Reddy, Duke
15 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
bai
index
index of IGVFFI3417STJG
Tim Reddy, Duke
5.9 MB
validated