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IGVFFI3234RYMD

released
validated
File Set
IGVFDS9906UGWB(knockout RNA-seq: fold change over control, transcript quantifications, transcriptome alignments)
Summary
GRCh38 filtered transcriptome alignments
Analysis Step Version
/analysis-step-versions/7298947c-9675-4de2-933a-642bde562751/
File Format
bam
Content Type
transcriptome alignments
Content Summary
filtered transcriptome alignments
Aliases
charles-gersbach:cd8-tcells-rna-seq-cas-ko-znf217-bam-rep2
md5sum
bededb69650e595ab5fd84d4c392dd54
Content MD5sum
ee947a5916557bf429724cd8857d6caa
File Size
2.8 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/cd8.rnaseq.pSM73.znf217.d2.star2.Aligned.out.sorted.bam
Checkfiles Version
Legacy version of checkfiles

Alignment Details

Reference Files
Filtered
True
Genome Assembly
GRCh38

Samples

6 items
Sample Terms
Summary
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)

Files This File Derives From

2 items
fastq
reads
Charles Gersbach, Duke
3.2 GB
validated
fastq
reads
Charles Gersbach, Duke
3.0 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
transcript quantifications
GRCh38 transcript quantifications
Charles Gersbach, Duke
549 KB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke