IGVFFI2876YHRJ

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/alignment-files/IGVFFI2876YHRJ/",
4    "@type": [
5        "AlignmentFile",
6        "File",
7        "Item"
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9    "accession": "IGVFFI2876YHRJ",
10    "aliases": [
11        "tim-reddy:starr-seq-rna-bam-k562-P010"
12    ],
13    "analysis_step_version": "/analysis-step-versions/cfaab400-714a-45b5-9800-3ff6f9c929c2/",
14    "assay_titles": [
15        "STARR-seq"
16    ],
17    "assembly": "GRCh38",
18    "audit": {},
19    "award": {
20        "@id": "/awards/HG012053/",
21        "component": "functional characterization"
22    },
23    "checkfiles_version": "v14",
24    "content_md5sum": "aa598aa9c718f1bf5b62a0cfbe79c7ed",
25    "content_summary": "unfiltered alignments",
26    "content_type": "alignments",
27    "controlled_access": false,
28    "creation_timestamp": "2025-02-06T14:27:09.984884+00:00",
29    "derived_from": [
30        "/sequence-files/IGVFFI3624EAKD/",
31        "/sequence-files/IGVFFI2582XXJO/"
32    ],
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36        "@type": [
37            "AnalysisSet",
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39            "Item"
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41        "accession": "IGVFDS6245HBJO",
42        "data_use_limitation_summaries": [
43            "no certificate"
44        ],
45        "file_set_type": "principal analysis",
46        "samples": [
47            {
48                "@id": "/in-vitro-systems/IGVFSM2696YZXW/",
49                "@type": [
50                    "InVitroSystem",
51                    "Biosample",
52                    "Sample",
53                    "Item"
54                ],
55                "accession": "IGVFSM2696YZXW",
56                "classifications": [
57                    "cell line"
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59                "sample_terms": [
60                    {
61                        "@id": "/sample-terms/EFO_0002067/",
62                        "status": "released",
63                        "term_name": "K562"
64                    }
65                ],
66                "status": "released",
67                "summary": "Homo sapiens (female) K562 cell line transfected with a reporter library",
68                "taxa": "Homo sapiens"
69            }
70        ],
71        "status": "released",
72        "summary": "STARR-seq integrating a reporter library targeting random selections genome-wide"
73    },
74    "file_size": 8112852375,
75    "filtered": false,
76    "gene_list_for": [],
77    "href": "/alignment-files/IGVFFI2876YHRJ/@@download/IGVFFI2876YHRJ.bam",
78    "input_file_for": [
79        "/index-files/IGVFFI2655DNQJ/"
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81    "integrated_in": [],
82    "lab": {
83        "@id": "/labs/tim-reddy/",
84        "title": "Tim Reddy, Duke"
85    },
86    "loci_list_for": [],
87    "md5sum": "3294b5b5c2f3622119da623cb5967435",
88    "quality_metrics": [],
89    "read_count": 90747152,
90    "redacted": false,
91    "reference_files": [
92        "/reference-files/IGVFFI0653VCGH/"
93    ],
94    "release_timestamp": "2025-04-09T16:40:16.427781+00:00",
95    "s3_uri": "s3://igvf-files/2025/02/06/51109b0e-115d-4c57-95c0-dda5cd0d8005/IGVFFI2876YHRJ.bam",
96    "schema_version": "14",
97    "status": "released",
98    "submitted_by": {
99        "@id": "/users/29f5f78d-ac90-421e-90c6-a90e1dc407a7/",
100        "title": "Alejandro Barrera"
101    },
102    "submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_1_STARR_seq/K562.starrseq.rna.pool10.f3q10.sorted.with_umis.dups_marked.bam",
103    "summary": "GRCh38 unfiltered alignments",
104    "upload_status": "validated",
105    "uuid": "51109b0e-115d-4c57-95c0-dda5cd0d8005",
106    "workflow": {
107        "@id": "/workflows/IGVFWF6957ZNII/",
108        "name": "SUPERSTARR Pipeline",
109        "uniform_pipeline": false
110    }
111}