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IGVFFI2861TVGD

released
validated
File Set
IGVFDS2766BVRH(SUPERSTARR: alignments, index, reporter genomic variant effects, reporter variants)
Summary
custom assembly unfiltered alignments
Analysis Step Version
/analysis-step-versions/13a525ab-87f3-4e73-a405-0f7a41c043de/
File Format
bam
Content Type
alignments
Content Summary
unfiltered alignments
Aliases
tim-reddy:starr-seq-rna-bam-personal-genome-P019
md5sum
664c86e01e1f7da1cf1fae8cea29c15b
Content MD5sum
d4a4ee4a394d336a0c5a5868b37bb620
File Size
9.7 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_1_STARR_seq/K562.starrseq.rna.pool19.personal_genome.sorted.bam
Checkfiles Version
v14
Attribution
Tim Reddy, Duke

Alignment Details

Reference Files
Genome Assembly
custom

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line transfected with a reporter library

Files This File Derives From

2 items
fastq
reads
Tim Reddy, Duke
11 GB
validated
fastq
reads
Tim Reddy, Duke
9.4 GB
validated

Files Derived From This File

2 items
tsv
reporter variants
GRCh38 reporter variants
Bill Majoros, Duke
34 MB
validation exempted
bai
index
index of IGVFFI2861TVGD
Tim Reddy, Duke
3.6 MB
validated