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IGVFFI2664SVPC

released
validated
File Set
IGVFDS1147GIJW(SUPERSTARR: alignments, index, reporter genomic variant effects, reporter variants)
Summary
custom assembly unfiltered alignments
Analysis Step Version
/analysis-step-versions/13a525ab-87f3-4e73-a405-0f7a41c043de/
File Format
bam
Content Type
alignments
Content Summary
unfiltered alignments
Aliases
tim-reddy:starr-seq-dna-bam-personal-genome-P015
md5sum
86887d71dd9e9a6985859e7b30fd11f7
Content MD5sum
4879aac28e34ad89f57f5d48daf0a8ab
File Size
7.5 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_1_STARR_seq/K562.starrseq.dna.pool15.personal_genome.sorted.bam
Checkfiles Version
v14
Attribution
Tim Reddy, Duke

Alignment Details

Reference Files
Genome Assembly
custom

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line transfected with a reporter library

Files This File Derives From

2 items
fastq
reads
Tim Reddy, Duke
7.3 GB
validated
fastq
reads
Tim Reddy, Duke
8.0 GB
validated

Files Derived From This File

2 items
bai
index
index of IGVFFI2664SVPC
Tim Reddy, Duke
2.5 MB
validated
tsv
reporter variants
GRCh38 reporter variants
Bill Majoros, Duke
31 MB
validation exempted