IGVFFI1939MBPM

released

validated

File Set

IGVFDS9143TFRW(CRISPR interference FACS screen targeting CCR7: alignments, fold change over control, guide quantifications)

Summary

custom assembly unfiltered alignments

Analysis Step Version

/analysis-step-versions/f9f6ae88-d515-4e49-9902-deea3cf87703/

File Format

bam

Content Type

alignments

Content Summary

unfiltered alignments

Aliases

charles-gersbach:cd8-tcells-alignment-crispri-ccr7-high-bin-rep2

md5sum

55624683eab85eeb7a3a914309d598cd

Content MD5sum

7f4342ba667477ee64c34c91672a442c

File Size

56 MB

Submitted File Name

/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/CCR7pos-pSM27-TF-H3_S4.sorted.bam

Checkfiles Version

Legacy version of checkfiles

Alignment Details

Reference Files

IGVFFI6999YLZG

Genome Assembly

custom

Samples

4 items

Sample Terms

Summary

IGVFSM1205VMNO

PrimaryCell

CD8-positive, alpha-beta memory T cell

CD8-positive, alpha-beta memory T cell, Homo sapiens (sorting details: FACS bin for 90-100% expression of CCR7) modified with CRISPRi Sa-dCas9, transduced (lentivirus) with a guide library (MOI of 0.4)

IGVFSM2207SJEN

PrimaryCell

CD8-positive, alpha-beta memory T cell

IGVFSM7413JCSK

PrimaryCell

CD8-positive, alpha-beta memory T cell

CD8-positive, alpha-beta memory T cell, Homo sapiens (sorting details: FACS bin for 0-10% expression of CCR7) modified with CRISPRi Sa-dCas9, transduced (lentivirus) with a guide library (MOI of 0.4)

IGVFSM9398LTWW

PrimaryCell

CD8-positive, alpha-beta memory T cell

CD8-positive, alpha-beta memory T cell, Homo sapiens (sorting details: FACS bin for 0-10% expression of CCR7) modified with CRISPRi Sa-dCas9, transduced (lentivirus) with a guide library (MOI of 0.4)