{
"@context": "/terms/",
"@id": "/alignment-files/IGVFFI1333ENDI/",
"@type": [
"AlignmentFile",
"File",
"Item"
],
"accession": "IGVFFI1333ENDI",
"aliases": [
"maya-kasowski:sample_4262_WGS_bam"
],
"assay_titles": [
"WGS"
],
"assembly": "GRCh38",
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"checkfiles_version": "v17",
"content_md5sum": "76b973d60c9b7c3585a1f1ada47384a4",
"content_summary": "unfiltered alignments",
"content_type": "alignments",
"controlled_access": true,
"creation_timestamp": "2025-03-06T15:51:37.743858+00:00",
"file_format": "bam",
"file_set": {
"@id": "/measurement-sets/IGVFDS1637QWHP/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1637QWHP",
"assay_term": {
"@id": "/assay-terms/OBI_0002117/",
"term_name": "whole genome sequencing assay"
},
"file_set_type": "experimental data",
"samples": [
{
"@id": "/primary-cells/IGVFSM8506OXWG/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8506OXWG",
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"status": "released",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "Homo sapiens (male) bone marrow cell",
"taxa": "Homo sapiens"
}
],
"status": "released",
"summary": "WGS"
},
"file_size": 92244660826,
"filtered": false,
"gene_list_for": [],
"href": "/alignment-files/IGVFFI1333ENDI/@@download/IGVFFI1333ENDI.bam",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/maya-kasowski/",
"title": "Maya Kasowski, Stanford"
},
"loci_list_for": [],
"md5sum": "0205d96a742691a9ceb00beb6a721cb5",
"quality_metrics": [],
"read_count": 1372422659,
"redacted": false,
"reference_files": [
"/reference-files/IGVFFI0653VCGH/"
],
"release_timestamp": "2025-03-26T19:37:02.337584+00:00",
"s3_uri": "s3://igvf-restricted-files/2025/03/06/42ccd56b-ced0-49f9-a422-b4b7885d09bf/IGVFFI1333ENDI.bam",
"schema_version": "14",
"status": "released",
"submitted_by": {
"@id": "/users/2bebcf9d-414f-4058-8d97-00020741a419/",
"title": "Shouvik Mani"
},
"submitted_file_name": "/users/shouvikm/data/WGS/4262_KASWGS18/G24-3502_6a958513-7930-46a6-b54c-de6ddb2a4ba1_24H-067MP0088_2024-04-01T03:34:56.558Z.bam",
"summary": "GRCh38 unfiltered alignments",
"upload_status": "validated",
"uuid": "42ccd56b-ced0-49f9-a422-b4b7885d09bf"
}