IGVFFI1198PNDA

{
    "@context": "/terms/",
    "@id": "/alignment-files/IGVFFI1198PNDA/",
    "@type": [
        "AlignmentFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI1198PNDA",
    "aliases": [
        "charles-gersbach:cd8-tcells-atac-seq-acute-activation-batf3-bam-rep2"
    ],
    "analysis_step_version": "/analysis-step-versions/c95d766a-a900-4694-8065-e12651f618ba/",
    "assay_titles": [
        "ATAC-seq"
    ],
    "assembly": "GRCh38",
    "audit": {},
    "award": {
        "@id": "/awards/HG012053/",
        "component": "functional characterization"
    },
    "content_md5sum": "79394044ceed23d363c1bdd372033b4e",
    "content_summary": "filtered alignments",
    "content_type": "alignments",
    "controlled_access": false,
    "creation_timestamp": "2024-10-14T21:14:09.366874+00:00",
    "derived_from": [
        "/sequence-files/IGVFFI0207GMGR/",
        "/sequence-files/IGVFFI1920MPCQ/"
    ],
    "file_format": "bam",
    "file_set": {
        "@id": "/analysis-sets/IGVFDS1013MILB/",
        "accession": "IGVFDS1013MILB",
        "file_set_type": "intermediate analysis",
        "samples": [
            {
                "@id": "/primary-cells/IGVFSM0066TACG/",
                "accession": "IGVFSM0066TACG",
                "classifications": [
                    "primary cell"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/CL_0000909/",
                        "term_name": "CD8-positive, alpha-beta memory T cell"
                    }
                ],
                "summary": "CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library",
                "taxa": "Homo sapiens"
            },
            {
                "@id": "/primary-cells/IGVFSM4716FORO/",
                "accession": "IGVFSM4716FORO",
                "classifications": [
                    "primary cell"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/CL_0000909/",
                        "term_name": "CD8-positive, alpha-beta memory T cell"
                    }
                ],
                "summary": "CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library",
                "taxa": "Homo sapiens"
            },
            {
                "@id": "/primary-cells/IGVFSM0293OVAT/",
                "accession": "IGVFSM0293OVAT",
                "classifications": [
                    "primary cell"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/CL_0000909/",
                        "term_name": "CD8-positive, alpha-beta memory T cell"
                    }
                ],
                "summary": "CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library",
                "taxa": "Homo sapiens"
            }
        ],
        "summary": "ATAC-seq: alignments"
    },
    "file_size": 1217662098,
    "filtered": true,
    "gene_list_for": [],
    "href": "/alignment-files/IGVFFI1198PNDA/@@download/IGVFFI1198PNDA.bam",
    "input_file_for": [
        "/tabular-files/IGVFFI4701TPMH/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/charles-gersbach/",
        "title": "Charles Gersbach, Duke"
    },
    "loci_list_for": [],
    "md5sum": "f041ba3e621f5652f404bdda353ca31c",
    "read_count": 40330143,
    "redacted": false,
    "reference_files": [
        "/reference-files/IGVFFI0653VCGH/"
    ],
    "release_timestamp": "2024-10-29T17:33:36.208011+00:00",
    "s3_uri": "s3://igvf-files/2024/10/14/f8f43fe5-d4af-46e0-b95f-ff32ebbdea8f/IGVFFI1198PNDA.bam",
    "schema_version": "11",
    "status": "released",
    "submitted_by": {
        "@id": "/users/29f5f78d-ac90-421e-90c6-a90e1dc407a7/",
        "title": "Alejandro Barrera"
    },
    "submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/SCM-70-rep2.masked.dups_marked.bam",
    "summary": "GRCh38 filtered alignments",
    "upload_status": "validated",
    "uuid": "f8f43fe5-d4af-46e0-b95f-ff32ebbdea8f"
}