{
"@context": "/terms/",
"@id": "/alignment-files/IGVFFI0271DDBB/",
"@type": [
"AlignmentFile",
"File",
"Item"
],
"accession": "IGVFFI0271DDBB",
"aliases": [
"maya-kasowski:sample_4535_WGS_bam"
],
"assay_titles": [
"WGS"
],
"assembly": "GRCh38",
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"checkfiles_version": "v17",
"content_md5sum": "54108f346eff059b83f72cdd56768d1f",
"content_summary": "unfiltered alignments",
"content_type": "alignments",
"controlled_access": true,
"creation_timestamp": "2025-03-06T15:09:55.035994+00:00",
"file_format": "bam",
"file_set": {
"@id": "/measurement-sets/IGVFDS4450TAOB/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS4450TAOB",
"assay_term": {
"@id": "/assay-terms/OBI_0002117/",
"term_name": "whole genome sequencing assay"
},
"file_set_type": "experimental data",
"samples": [
{
"@id": "/primary-cells/IGVFSM6360JZDZ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6360JZDZ",
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"status": "released",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "Homo sapiens (male) bone marrow cell",
"taxa": "Homo sapiens"
}
],
"status": "released",
"summary": "WGS"
},
"file_size": 80765172077,
"filtered": false,
"gene_list_for": [],
"href": "/alignment-files/IGVFFI0271DDBB/@@download/IGVFFI0271DDBB.bam",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/maya-kasowski/",
"title": "Maya Kasowski, Stanford"
},
"loci_list_for": [],
"md5sum": "8da0e91e93ec27c5275cc5e2288d13bd",
"quality_metrics": [],
"read_count": 1214906145,
"redacted": false,
"reference_files": [
"/reference-files/IGVFFI0653VCGH/"
],
"release_timestamp": "2025-03-26T19:36:58.641345+00:00",
"s3_uri": "s3://igvf-restricted-files/2025/03/06/8c8613f9-989e-4b93-a81c-2312eb6efcff/IGVFFI0271DDBB.bam",
"schema_version": "14",
"status": "released",
"submitted_by": {
"@id": "/users/2bebcf9d-414f-4058-8d97-00020741a419/",
"title": "Shouvik Mani"
},
"submitted_file_name": "/users/shouvikm/data/WGS/4535_KASWGS16/G24-3500_428c21f0-3554-41c5-82c7-1470d8e55b1f_24H-067MP0082_2024-04-01T02:58:11.369Z.bam",
"summary": "GRCh38 unfiltered alignments",
"upload_status": "validated",
"uuid": "8c8613f9-989e-4b93-a81c-2312eb6efcff"
}