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IGVFFI0267QTWO

released
validated
File Set
IGVFDS4147RERW(single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq))
Summary
GRCm39 unfiltered alignments
Analysis Step Version
/analysis-step-versions/39c0498d-91f6-42de-8896-2fab1403f032/
File Format
bam
Content Type
alignments
Content Summary
unfiltered alignments
Aliases
buenrostro-bernstein:IGVFDS4147RERW_bam
md5sum
7e60bea5164a1eaee25fbb6956d8072b
Content MD5sum
ec9856b31d027450795eb779c95322f3
File Size
6.3 GB
Submitted File Name
gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/a6d4a8e2-651e-421f-ae34-bfdf4cf1f42e/single_cell_pipeline/67efe196-b6fa-4d32-adf0-323869bb96b7/call-atac/wf_atac/ab98e91d-a104-4f77-b7d9-4a764546d96e/call-generate_bam/SS-PKR-131.bam
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad

Alignment Details

Reference Files
Genome Assembly
GRCm39

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 131)

Files This File Derives From

18 items
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
fastq
reads
Jason Buenrostro, Broad
1.1 GB
validated
fastq
reads
Jason Buenrostro, Broad
355 MB
validated
fastq
reads
Jason Buenrostro, Broad
203 MB
validated
fastq
reads
Jason Buenrostro, Broad
353 MB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
bai
index
index of IGVFFI0267QTWO
Jason Buenrostro, Broad
2.8 MB
validated