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putamen — IGVFSM9781KTKG
putamen — IGVFSM9781KTKG
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Summary
Homo sapiens (female, 86 years) putamen tissue associated with Parkinson's disease
Sample Terms
putamen
Sex
female
Age
86 years
Part of Sample
IGVFSM6897TWLC
Post-mortem Interval
630 minutes
Preservation Method
flash-freezing
Taxa
Homo sapiens
Sources
banner-health
Date Harvested
March 7, 2023
Aliases
igvf:corces_tissue_BANN0322_PUT_B1
Protocols
https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO4273OHGB
igvf:corces_donor_BANN0322
female
Homo sapiens
File Sets
32 items
1
2
3
4
Accession
Summary
Aliases
Lab
IGVFDS0058HQMM
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP014_G4_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS0738WMFX
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X041_G8_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS0957VZJU
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP014_G6_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS1691KPWU
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X041_G1_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS2612AYOV
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X041_G5_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS2731RLBA
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP014_G7_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS2943LQHU
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP014_G3_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS3071BBZO
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP014_G2_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS3083RFCQ
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_X041_G1_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS3473OBBZ
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP014_G8_RNA
Ryan Corces, Gladstone Institute UCSF
Multiplexed In Samples
16 items
1
2
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM0027DAWZ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples
IGVFSM0496VQZI
MultiplexedSample
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 14 more samples
IGVFSM0728SZZR
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples
IGVFSM1990PUGQ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples
IGVFSM3192MEUT
MultiplexedSample
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 14 more samples
IGVFSM3938LXBP
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples
IGVFSM4462GKQC
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples
IGVFSM4901QTFI
MultiplexedSample
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 14 more samples
IGVFSM5142KRLD
MultiplexedSample
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 14 more samples
IGVFSM5674WWIP
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF