posterior cingulate gyrus — IGVFSM9765SRME

preview
1{
2    "@context": "/terms/",
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4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM9765SRME",
11    "age": "72",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1504_CING_B2"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM9765SRME](/tissues/IGVFSM9765SRME/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM9765SRME/"
25            },
26            {
27                "category": "missing CCF ID",
28                "detail": "Tissue [IGVFSM9765SRME](/tissues/IGVFSM9765SRME/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_tissue_ccf_id",
32                "path": "/tissues/IGVFSM9765SRME/"
33            }
34        ]
35    },
36    "award": {
37        "@id": "/awards/HG012076/",
38        "component": "mapping"
39    },
40    "classifications": [
41        "tissue"
42    ],
43    "creation_timestamp": "2025-03-19T12:59:23.070900+00:00",
44    "date_obtained": "2023-08-09",
45    "disease_terms": [
46        {
47            "@id": "/phenotype-terms/DOID_14330/",
48            "status": "in progress",
49            "term_name": "Parkinson's disease"
50        }
51    ],
52    "donors": [
53        {
54            "@id": "/human-donors/IGVFDO7815RLQM/",
55            "accession": "IGVFDO7815RLQM",
56            "ethnicities": [
57                "European"
58            ],
59            "status": "preview"
60        }
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68            ],
69            "file_set_type": "experimental data",
70            "lab": {
71                "title": "Ryan Corces, Gladstone Institute UCSF"
72            },
73            "preferred_assay_title": "10x multiome",
74            "status": "preview",
75            "summary": "single-nucleus ATAC-seq (10x multiome)"
76        },
77        {
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82            ],
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84            "lab": {
85                "title": "Ryan Corces, Gladstone Institute UCSF"
86            },
87            "preferred_assay_title": "10x multiome",
88            "status": "preview",
89            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
90        },
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102            "status": "preview",
103            "summary": "single-nucleus ATAC-seq (10x multiome)"
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113                "title": "Ryan Corces, Gladstone Institute UCSF"
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115            "preferred_assay_title": "10x multiome",
116            "status": "preview",
117            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
118        },
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124            ],
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126            "lab": {
127                "title": "Ryan Corces, Gladstone Institute UCSF"
128            },
129            "preferred_assay_title": "10x multiome",
130            "status": "preview",
131            "summary": "single-nucleus ATAC-seq (10x multiome)"
132        },
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138            ],
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140            "lab": {
141                "title": "Ryan Corces, Gladstone Institute UCSF"
142            },
143            "preferred_assay_title": "10x multiome",
144            "status": "preview",
145            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
146        },
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152            ],
153            "file_set_type": "experimental data",
154            "lab": {
155                "title": "Ryan Corces, Gladstone Institute UCSF"
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157            "preferred_assay_title": "10x multiome",
158            "status": "preview",
159            "summary": "single-nucleus ATAC-seq (10x multiome)"
160        },
161        {
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165                "igvf:corces_measurementSet_X052_G8_RNA"
166            ],
167            "file_set_type": "experimental data",
168            "lab": {
169                "title": "Ryan Corces, Gladstone Institute UCSF"
170            },
171            "preferred_assay_title": "10x multiome",
172            "status": "preview",
173            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
174        },
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182            "lab": {
183                "title": "Ryan Corces, Gladstone Institute UCSF"
184            },
185            "preferred_assay_title": "10x multiome",
186            "status": "preview",
187            "summary": "single-nucleus ATAC-seq (10x multiome)"
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211                "title": "Ryan Corces, Gladstone Institute UCSF"
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215            "summary": "single-nucleus ATAC-seq (10x multiome)"
216        },
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225                "title": "Ryan Corces, Gladstone Institute UCSF"
226            },
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228            "status": "preview",
229            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
230        },
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238            "lab": {
239                "title": "Ryan Corces, Gladstone Institute UCSF"
240            },
241            "preferred_assay_title": "10x multiome",
242            "status": "preview",
243            "summary": "single-nucleus ATAC-seq (10x multiome)"
244        },
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253                "title": "Ryan Corces, Gladstone Institute UCSF"
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256            "status": "preview",
257            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
258        },
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266            "lab": {
267                "title": "Ryan Corces, Gladstone Institute UCSF"
268            },
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270            "status": "preview",
271            "summary": "single-nucleus ATAC-seq (10x multiome)"
272        },
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281                "title": "Ryan Corces, Gladstone Institute UCSF"
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285            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
286        }
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288    "institutional_certificates": [
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291            "certificate_identifier": "IP115-05",
292            "controlled_access": false,
293            "status": "in progress"
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295    ],
296    "lab": {
297        "@id": "/labs/ryan-corces/",
298        "title": "Ryan Corces, Gladstone Institute UCSF"
299    },
300    "lower_bound_age": 72,
301    "lower_bound_age_in_hours": 630720,
302    "multiplexed_in": [
303        {
304            "@id": "/multiplexed-samples/IGVFSM3279OAJX/",
305            "accession": "IGVFSM3279OAJX",
306            "status": "preview"
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308        {
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310            "accession": "IGVFSM0643NOLO",
311            "status": "preview"
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313        {
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316            "status": "preview"
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318        {
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321            "status": "preview"
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326            "status": "preview"
327        },
328        {
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330            "accession": "IGVFSM6674PZBO",
331            "status": "preview"
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333        {
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336            "status": "preview"
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338        {
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340            "accession": "IGVFSM3208SWPO",
341            "status": "preview"
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343    ],
344    "origin_of": [],
345    "part_of": "/tissues/IGVFSM4648YOXN/",
346    "parts": [],
347    "pmi": 215,
348    "pmi_units": "minute",
349    "pooled_in": [],
350    "preservation_method": "flash-freezing",
351    "protocols": [
352        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
353    ],
354    "sample_terms": [
355        {
356            "@id": "/sample-terms/UBERON_0002740/",
357            "status": "preview",
358            "term_name": "posterior cingulate gyrus"
359        }
360    ],
361    "schema_version": "21",
362    "sex": "female",
363    "sorted_fractions": [],
364    "sources": [
365        {
366            "@id": "/sources/banner-health/",
367            "status": "released",
368            "title": "Banner Health"
369        }
370    ],
371    "status": "preview",
372    "submitted_by": {
373        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
374        "title": "Ryan Corces"
375    },
376    "summary": "Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease",
377    "taxa": "Homo sapiens",
378    "upper_bound_age": 72,
379    "upper_bound_age_in_hours": 630720,
380    "uuid": "871c9d16-35d5-4465-aac9-73faa9bad31d",
381    "virtual": false
382}