posterior cingulate gyrus — IGVFSM9584BDOS

preview
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM9584BDOS/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
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11    "age": "75",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN0124_CING"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM9584BDOS](/tissues/IGVFSM9584BDOS/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM9584BDOS/"
25            },
26            {
27                "category": "mismatched status",
28                "detail": "Preview tissue [IGVFSM9584BDOS](/tissues/IGVFSM9584BDOS/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_item_status",
32                "path": "/tissues/IGVFSM9584BDOS/"
33            },
34            {
35                "category": "missing CCF ID",
36                "detail": "Tissue [IGVFSM9584BDOS](/tissues/IGVFSM9584BDOS/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
37                "level": 30,
38                "level_name": "INTERNAL_ACTION",
39                "name": "audit_tissue_ccf_id",
40                "path": "/tissues/IGVFSM9584BDOS/"
41            }
42        ]
43    },
44    "award": {
45        "@id": "/awards/HG012076/",
46        "component": "mapping"
47    },
48    "classifications": [
49        "tissue"
50    ],
51    "creation_timestamp": "2025-03-19T04:09:25.270246+00:00",
52    "date_obtained": "2022-11-10",
53    "disease_terms": [
54        {
55            "@id": "/phenotype-terms/MONDO_0004975/",
56            "status": "released",
57            "term_name": "Alzheimer disease"
58        },
59        {
60            "@id": "/phenotype-terms/DOID_14330/",
61            "status": "in progress",
62            "term_name": "Parkinson's disease"
63        },
64        {
65            "@id": "/phenotype-terms/DOID_9246/",
66            "status": "in progress",
67            "term_name": "cerebral amyloid angiopathy"
68        }
69    ],
70    "donors": [
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72            "@id": "/human-donors/IGVFDO6380POHE/",
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91            "preferred_assay_title": "10x multiome",
92            "status": "preview",
93            "summary": "single-nucleus ATAC-seq (10x multiome)"
94        },
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120            "status": "preview",
121            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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135            "summary": "single-nucleus ATAC-seq (10x multiome)"
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145                "title": "Ryan Corces, Gladstone Institute UCSF"
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159                "title": "Ryan Corces, Gladstone Institute UCSF"
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163            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
164        },
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173                "title": "Ryan Corces, Gladstone Institute UCSF"
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177            "summary": "single-nucleus ATAC-seq (10x multiome)"
178        },
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187                "title": "Ryan Corces, Gladstone Institute UCSF"
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201                "title": "Ryan Corces, Gladstone Institute UCSF"
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205            "summary": "single-nucleus ATAC-seq (10x multiome)"
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229                "title": "Ryan Corces, Gladstone Institute UCSF"
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233            "summary": "single-nucleus ATAC-seq (10x multiome)"
234        },
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239                "igvf:corces_measurementSet_X015_G1_RNA"
240            ],
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242            "lab": {
243                "title": "Ryan Corces, Gladstone Institute UCSF"
244            },
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246            "status": "preview",
247            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
248        },
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253                "igvf:corces_measurementSet_X015_G7_ATAC"
254            ],
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256            "lab": {
257                "title": "Ryan Corces, Gladstone Institute UCSF"
258            },
259            "preferred_assay_title": "10x multiome",
260            "status": "preview",
261            "summary": "single-nucleus ATAC-seq (10x multiome)"
262        },
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285                "title": "Ryan Corces, Gladstone Institute UCSF"
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296            ],
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299                "title": "Ryan Corces, Gladstone Institute UCSF"
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303            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
304        },
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313                "title": "Ryan Corces, Gladstone Institute UCSF"
314            },
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316            "status": "preview",
317            "summary": "single-nucleus ATAC-seq (10x multiome)"
318        },
319        {
320            "@id": "/measurement-sets/IGVFDS0571RKTK/",
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323                "igvf:corces_measurementSet_RP001_G3_RNA"
324            ],
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327                "title": "Ryan Corces, Gladstone Institute UCSF"
328            },
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331            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
332        },
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340            "lab": {
341                "title": "Ryan Corces, Gladstone Institute UCSF"
342            },
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344            "status": "preview",
345            "summary": "single-nucleus ATAC-seq (10x multiome)"
346        },
347        {
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355                "title": "Ryan Corces, Gladstone Institute UCSF"
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359            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
360        },
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369                "title": "Ryan Corces, Gladstone Institute UCSF"
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373            "summary": "single-nucleus ATAC-seq (10x multiome)"
374        },
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383                "title": "Ryan Corces, Gladstone Institute UCSF"
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387            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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425                "title": "Ryan Corces, Gladstone Institute UCSF"
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430        },
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443            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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467                "title": "Ryan Corces, Gladstone Institute UCSF"
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471            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
472        },
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500        },
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513            "summary": "single-nucleus ATAC-seq (10x multiome)"
514        },
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528        },
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537                "title": "Ryan Corces, Gladstone Institute UCSF"
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551                "title": "Ryan Corces, Gladstone Institute UCSF"
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555            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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565                "title": "Ryan Corces, Gladstone Institute UCSF"
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569            "summary": "single-nucleus ATAC-seq (10x multiome)"
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579                "title": "Ryan Corces, Gladstone Institute UCSF"
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583            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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593                "title": "Ryan Corces, Gladstone Institute UCSF"
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596            "status": "preview",
597            "summary": "single-nucleus ATAC-seq (10x multiome)"
598        },
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606            "lab": {
607                "title": "Ryan Corces, Gladstone Institute UCSF"
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610            "status": "preview",
611            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
612        },
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621                "title": "Ryan Corces, Gladstone Institute UCSF"
622            },
623            "preferred_assay_title": "10x multiome",
624            "status": "preview",
625            "summary": "single-nucleus ATAC-seq (10x multiome)"
626        },
627        {
628            "@id": "/measurement-sets/IGVFDS1887NZWO/",
629            "accession": "IGVFDS1887NZWO",
630            "aliases": [
631                "igvf:corces_measurementSet_RP025_G5_RNA"
632            ],
633            "file_set_type": "experimental data",
634            "lab": {
635                "title": "Ryan Corces, Gladstone Institute UCSF"
636            },
637            "preferred_assay_title": "10x multiome",
638            "status": "preview",
639            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
640        },
641        {
642            "@id": "/measurement-sets/IGVFDS2883YYPV/",
643            "accession": "IGVFDS2883YYPV",
644            "aliases": [
645                "igvf:corces_measurementSet_RP025_G6_ATAC"
646            ],
647            "file_set_type": "experimental data",
648            "lab": {
649                "title": "Ryan Corces, Gladstone Institute UCSF"
650            },
651            "preferred_assay_title": "10x multiome",
652            "status": "preview",
653            "summary": "single-nucleus ATAC-seq (10x multiome)"
654        },
655        {
656            "@id": "/measurement-sets/IGVFDS9042EIOS/",
657            "accession": "IGVFDS9042EIOS",
658            "aliases": [
659                "igvf:corces_measurementSet_RP025_G6_RNA"
660            ],
661            "file_set_type": "experimental data",
662            "lab": {
663                "title": "Ryan Corces, Gladstone Institute UCSF"
664            },
665            "preferred_assay_title": "10x multiome",
666            "status": "preview",
667            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
668        },
669        {
670            "@id": "/measurement-sets/IGVFDS7965KZXZ/",
671            "accession": "IGVFDS7965KZXZ",
672            "aliases": [
673                "igvf:corces_measurementSet_RP025_G8_ATAC"
674            ],
675            "file_set_type": "experimental data",
676            "lab": {
677                "title": "Ryan Corces, Gladstone Institute UCSF"
678            },
679            "preferred_assay_title": "10x multiome",
680            "status": "preview",
681            "summary": "single-nucleus ATAC-seq (10x multiome)"
682        },
683        {
684            "@id": "/measurement-sets/IGVFDS6467CIOG/",
685            "accession": "IGVFDS6467CIOG",
686            "aliases": [
687                "igvf:corces_measurementSet_RP025_G8_RNA"
688            ],
689            "file_set_type": "experimental data",
690            "lab": {
691                "title": "Ryan Corces, Gladstone Institute UCSF"
692            },
693            "preferred_assay_title": "10x multiome",
694            "status": "preview",
695            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
696        },
697        {
698            "@id": "/measurement-sets/IGVFDS5424OKKO/",
699            "accession": "IGVFDS5424OKKO",
700            "aliases": [
701                "igvf:corces_measurementSet_RP025_G7_ATAC"
702            ],
703            "file_set_type": "experimental data",
704            "lab": {
705                "title": "Ryan Corces, Gladstone Institute UCSF"
706            },
707            "preferred_assay_title": "10x multiome",
708            "status": "preview",
709            "summary": "single-nucleus ATAC-seq (10x multiome)"
710        },
711        {
712            "@id": "/measurement-sets/IGVFDS5137LMUM/",
713            "accession": "IGVFDS5137LMUM",
714            "aliases": [
715                "igvf:corces_measurementSet_RP025_G7_RNA"
716            ],
717            "file_set_type": "experimental data",
718            "lab": {
719                "title": "Ryan Corces, Gladstone Institute UCSF"
720            },
721            "preferred_assay_title": "10x multiome",
722            "status": "preview",
723            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
724        },
725        {
726            "@id": "/measurement-sets/IGVFDS5320BHIT/",
727            "accession": "IGVFDS5320BHIT",
728            "aliases": [
729                "igvf:corces_measurementSet_RP025_G4_ATAC"
730            ],
731            "file_set_type": "experimental data",
732            "lab": {
733                "title": "Ryan Corces, Gladstone Institute UCSF"
734            },
735            "preferred_assay_title": "10x multiome",
736            "status": "preview",
737            "summary": "single-nucleus ATAC-seq (10x multiome)"
738        },
739        {
740            "@id": "/measurement-sets/IGVFDS2310NNOV/",
741            "accession": "IGVFDS2310NNOV",
742            "aliases": [
743                "igvf:corces_measurementSet_RP025_G4_RNA"
744            ],
745            "file_set_type": "experimental data",
746            "lab": {
747                "title": "Ryan Corces, Gladstone Institute UCSF"
748            },
749            "preferred_assay_title": "10x multiome",
750            "status": "preview",
751            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
752        }
753    ],
754    "institutional_certificates": [
755        {
756            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
757            "certificate_identifier": "IP115-05",
758            "controlled_access": false,
759            "status": "in progress"
760        }
761    ],
762    "lab": {
763        "@id": "/labs/ryan-corces/",
764        "title": "Ryan Corces, Gladstone Institute UCSF"
765    },
766    "lower_bound_age": 75,
767    "lower_bound_age_in_hours": 657000,
768    "multiplexed_in": [
769        {
770            "@id": "/multiplexed-samples/IGVFSM9749BFVC/",
771            "accession": "IGVFSM9749BFVC",
772            "status": "preview"
773        },
774        {
775            "@id": "/multiplexed-samples/IGVFSM4134PPFH/",
776            "accession": "IGVFSM4134PPFH",
777            "status": "preview"
778        },
779        {
780            "@id": "/multiplexed-samples/IGVFSM1366AGHP/",
781            "accession": "IGVFSM1366AGHP",
782            "status": "preview"
783        },
784        {
785            "@id": "/multiplexed-samples/IGVFSM1243ZSOP/",
786            "accession": "IGVFSM1243ZSOP",
787            "status": "preview"
788        },
789        {
790            "@id": "/multiplexed-samples/IGVFSM7474GXHG/",
791            "accession": "IGVFSM7474GXHG",
792            "status": "preview"
793        },
794        {
795            "@id": "/multiplexed-samples/IGVFSM3424EEIT/",
796            "accession": "IGVFSM3424EEIT",
797            "status": "preview"
798        },
799        {
800            "@id": "/multiplexed-samples/IGVFSM5630CGRI/",
801            "accession": "IGVFSM5630CGRI",
802            "status": "preview"
803        },
804        {
805            "@id": "/multiplexed-samples/IGVFSM9878TZLL/",
806            "accession": "IGVFSM9878TZLL",
807            "status": "preview"
808        },
809        {
810            "@id": "/multiplexed-samples/IGVFSM8767PGTT/",
811            "accession": "IGVFSM8767PGTT",
812            "status": "preview"
813        },
814        {
815            "@id": "/multiplexed-samples/IGVFSM4595ROAA/",
816            "accession": "IGVFSM4595ROAA",
817            "status": "preview"
818        },
819        {
820            "@id": "/multiplexed-samples/IGVFSM7927MDCD/",
821            "accession": "IGVFSM7927MDCD",
822            "status": "preview"
823        },
824        {
825            "@id": "/multiplexed-samples/IGVFSM8255WJLC/",
826            "accession": "IGVFSM8255WJLC",
827            "status": "preview"
828        },
829        {
830            "@id": "/multiplexed-samples/IGVFSM7329LEXT/",
831            "accession": "IGVFSM7329LEXT",
832            "status": "preview"
833        },
834        {
835            "@id": "/multiplexed-samples/IGVFSM7076WLCU/",
836            "accession": "IGVFSM7076WLCU",
837            "status": "preview"
838        },
839        {
840            "@id": "/multiplexed-samples/IGVFSM4020DOCK/",
841            "accession": "IGVFSM4020DOCK",
842            "status": "preview"
843        },
844        {
845            "@id": "/multiplexed-samples/IGVFSM7915KUKE/",
846            "accession": "IGVFSM7915KUKE",
847            "status": "preview"
848        },
849        {
850            "@id": "/multiplexed-samples/IGVFSM7939CAGT/",
851            "accession": "IGVFSM7939CAGT",
852            "status": "preview"
853        },
854        {
855            "@id": "/multiplexed-samples/IGVFSM4296CDRL/",
856            "accession": "IGVFSM4296CDRL",
857            "status": "preview"
858        },
859        {
860            "@id": "/multiplexed-samples/IGVFSM0036UTPF/",
861            "accession": "IGVFSM0036UTPF",
862            "status": "preview"
863        },
864        {
865            "@id": "/multiplexed-samples/IGVFSM4968PVUL/",
866            "accession": "IGVFSM4968PVUL",
867            "status": "preview"
868        },
869        {
870            "@id": "/multiplexed-samples/IGVFSM9856IYBQ/",
871            "accession": "IGVFSM9856IYBQ",
872            "status": "preview"
873        },
874        {
875            "@id": "/multiplexed-samples/IGVFSM6826DJHO/",
876            "accession": "IGVFSM6826DJHO",
877            "status": "preview"
878        },
879        {
880            "@id": "/multiplexed-samples/IGVFSM9062JOAG/",
881            "accession": "IGVFSM9062JOAG",
882            "status": "preview"
883        },
884        {
885            "@id": "/multiplexed-samples/IGVFSM5834DWZB/",
886            "accession": "IGVFSM5834DWZB",
887            "status": "preview"
888        }
889    ],
890    "origin_of": [],
891    "parts": [],
892    "pmi": 270,
893    "pmi_units": "minute",
894    "pooled_in": [],
895    "preservation_method": "flash-freezing",
896    "protocols": [
897        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
898    ],
899    "sample_terms": [
900        {
901            "@id": "/sample-terms/UBERON_0002740/",
902            "status": "preview",
903            "term_name": "posterior cingulate gyrus"
904        }
905    ],
906    "schema_version": "21",
907    "sex": "male",
908    "sorted_fractions": [],
909    "sources": [
910        {
911            "@id": "/sources/banner-health/",
912            "status": "released",
913            "title": "Banner Health"
914        }
915    ],
916    "status": "preview",
917    "submitted_by": {
918        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
919        "title": "Ryan Corces"
920    },
921    "summary": "Homo sapiens (male, 75 years) posterior cingulate gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy",
922    "taxa": "Homo sapiens",
923    "upper_bound_age": 75,
924    "upper_bound_age_in_hours": 657000,
925    "uuid": "cce06418-5a93-4aa2-b754-f83c1f01fc8c",
926    "virtual": false
927}