posterior cingulate gyrus — IGVFSM9381THXH

preview
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM9381THXH/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM9381THXH",
11    "age": "83",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN9917_CING"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM9381THXH](/tissues/IGVFSM9381THXH/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM9381THXH/"
25            },
26            {
27                "category": "mismatched status",
28                "detail": "Preview tissue [IGVFSM9381THXH](/tissues/IGVFSM9381THXH/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_item_status",
32                "path": "/tissues/IGVFSM9381THXH/"
33            },
34            {
35                "category": "missing CCF ID",
36                "detail": "Tissue [IGVFSM9381THXH](/tissues/IGVFSM9381THXH/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
37                "level": 30,
38                "level_name": "INTERNAL_ACTION",
39                "name": "audit_tissue_ccf_id",
40                "path": "/tissues/IGVFSM9381THXH/"
41            }
42        ]
43    },
44    "award": {
45        "@id": "/awards/HG012076/",
46        "component": "mapping"
47    },
48    "classifications": [
49        "tissue"
50    ],
51    "creation_timestamp": "2025-03-19T04:10:58.528891+00:00",
52    "date_obtained": "2023-01-04",
53    "disease_terms": [
54        {
55            "@id": "/phenotype-terms/DOID_14330/",
56            "status": "in progress",
57            "term_name": "Parkinson's disease"
58        },
59        {
60            "@id": "/phenotype-terms/DOID_9246/",
61            "status": "in progress",
62            "term_name": "cerebral amyloid angiopathy"
63        }
64    ],
65    "donors": [
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67            "@id": "/human-donors/IGVFDO7095OCLJ/",
68            "accession": "IGVFDO7095OCLJ",
69            "ethnicities": [
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72            "status": "preview"
73        }
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83            "lab": {
84                "title": "Ryan Corces, Gladstone Institute UCSF"
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87            "status": "preview",
88            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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101            "status": "preview",
102            "summary": "single-nucleus ATAC-seq (10x multiome)"
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112                "title": "Ryan Corces, Gladstone Institute UCSF"
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115            "status": "preview",
116            "summary": "single-nucleus ATAC-seq (10x multiome)"
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126                "title": "Ryan Corces, Gladstone Institute UCSF"
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130            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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139            "lab": {
140                "title": "Ryan Corces, Gladstone Institute UCSF"
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142            "preferred_assay_title": "10x multiome",
143            "status": "preview",
144            "summary": "single-nucleus ATAC-seq (10x multiome)"
145        },
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173        },
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182                "title": "Ryan Corces, Gladstone Institute UCSF"
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186            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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196                "title": "Ryan Corces, Gladstone Institute UCSF"
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199            "status": "preview",
200            "summary": "single-nucleus ATAC-seq (10x multiome)"
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223            "lab": {
224                "title": "Ryan Corces, Gladstone Institute UCSF"
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227            "status": "preview",
228            "summary": "single-nucleus ATAC-seq (10x multiome)"
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237            "lab": {
238                "title": "Ryan Corces, Gladstone Institute UCSF"
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240            "preferred_assay_title": "10x multiome",
241            "status": "preview",
242            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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251            "lab": {
252                "title": "Ryan Corces, Gladstone Institute UCSF"
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255            "status": "preview",
256            "summary": "single-nucleus ATAC-seq (10x multiome)"
257        },
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266                "title": "Ryan Corces, Gladstone Institute UCSF"
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280                "title": "Ryan Corces, Gladstone Institute UCSF"
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284            "summary": "single-nucleus ATAC-seq (10x multiome)"
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308                "title": "Ryan Corces, Gladstone Institute UCSF"
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322                "title": "Ryan Corces, Gladstone Institute UCSF"
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326            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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336                "title": "Ryan Corces, Gladstone Institute UCSF"
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350                "title": "Ryan Corces, Gladstone Institute UCSF"
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364                "title": "Ryan Corces, Gladstone Institute UCSF"
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378                "title": "Ryan Corces, Gladstone Institute UCSF"
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382            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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406                "title": "Ryan Corces, Gladstone Institute UCSF"
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410            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
411        }
412    ],
413    "institutional_certificates": [
414        {
415            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
416            "certificate_identifier": "IP115-05",
417            "controlled_access": false,
418            "status": "in progress"
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421    "lab": {
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423        "title": "Ryan Corces, Gladstone Institute UCSF"
424    },
425    "lower_bound_age": 83,
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427    "multiplexed_in": [
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463        {
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466            "status": "preview"
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468        {
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470            "accession": "IGVFSM3515JFEY",
471            "status": "preview"
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473        {
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476            "status": "preview"
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483        {
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485            "accession": "IGVFSM4734YTAT",
486            "status": "preview"
487        }
488    ],
489    "origin_of": [],
490    "parts": [],
491    "pmi": 720,
492    "pmi_units": "minute",
493    "pooled_in": [],
494    "preservation_method": "flash-freezing",
495    "protocols": [
496        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
497    ],
498    "sample_terms": [
499        {
500            "@id": "/sample-terms/UBERON_0002740/",
501            "status": "preview",
502            "term_name": "posterior cingulate gyrus"
503        }
504    ],
505    "schema_version": "21",
506    "sex": "female",
507    "sorted_fractions": [],
508    "sources": [
509        {
510            "@id": "/sources/banner-health/",
511            "status": "released",
512            "title": "Banner Health"
513        }
514    ],
515    "status": "preview",
516    "submitted_by": {
517        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
518        "title": "Ryan Corces"
519    },
520    "summary": "Homo sapiens (female, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy",
521    "taxa": "Homo sapiens",
522    "upper_bound_age": 83,
523    "upper_bound_age_in_hours": 727080,
524    "uuid": "b637dd40-3470-4e71-ad42-98cebefc35c1",
525    "virtual": false
526}