cerebellar cortex — IGVFSM9133DPZS

preview
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM9133DPZS/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM9133DPZS",
11    "age": "86",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN0227_CBL_B1"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing CCF ID",
20                "detail": "Tissue [IGVFSM9133DPZS](/tissues/IGVFSM9133DPZS/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_tissue_ccf_id",
24                "path": "/tissues/IGVFSM9133DPZS/"
25            }
26        ]
27    },
28    "award": {
29        "@id": "/awards/HG012076/",
30        "component": "mapping"
31    },
32    "classifications": [
33        "tissue"
34    ],
35    "creation_timestamp": "2025-03-19T12:57:10.372418+00:00",
36    "date_obtained": "2022-09-01",
37    "donors": [
38        {
39            "@id": "/human-donors/IGVFDO9236YUAT/",
40            "accession": "IGVFDO9236YUAT",
41            "ethnicities": [
42                "European"
43            ],
44            "status": "preview"
45        }
46    ],
47    "file_sets": [
48        {
49            "@id": "/measurement-sets/IGVFDS5735HWHA/",
50            "accession": "IGVFDS5735HWHA",
51            "aliases": [
52                "igvf:corces_measurementSet_X004_G3_ATAC"
53            ],
54            "file_set_type": "experimental data",
55            "lab": {
56                "title": "Ryan Corces, Gladstone Institute UCSF"
57            },
58            "preferred_assay_title": "10x multiome",
59            "status": "preview",
60            "summary": "single-nucleus ATAC-seq (10x multiome)"
61        },
62        {
63            "@id": "/measurement-sets/IGVFDS5528ZTLH/",
64            "accession": "IGVFDS5528ZTLH",
65            "aliases": [
66                "igvf:corces_measurementSet_X004_G3_RNA"
67            ],
68            "file_set_type": "experimental data",
69            "lab": {
70                "title": "Ryan Corces, Gladstone Institute UCSF"
71            },
72            "preferred_assay_title": "10x multiome",
73            "status": "preview",
74            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
75        }
76    ],
77    "institutional_certificates": [
78        {
79            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
80            "certificate_identifier": "IP115-05",
81            "controlled_access": false,
82            "data_use_limitation_summary": "No limitations",
83            "status": "in progress"
84        }
85    ],
86    "lab": {
87        "@id": "/labs/ryan-corces/",
88        "title": "Ryan Corces, Gladstone Institute UCSF"
89    },
90    "lower_bound_age": 86,
91    "lower_bound_age_in_hours": 753360,
92    "multiplexed_in": [],
93    "origin_of": [],
94    "part_of": "/tissues/IGVFSM2210PTXI/",
95    "parts": [],
96    "pmi": 180,
97    "pmi_units": "minute",
98    "pooled_in": [],
99    "preservation_method": "flash-freezing",
100    "protocols": [
101        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
102    ],
103    "sample_terms": [
104        {
105            "@id": "/sample-terms/UBERON_0002129/",
106            "status": "preview",
107            "term_name": "cerebellar cortex"
108        }
109    ],
110    "schema_version": "21",
111    "sex": "male",
112    "sorted_fractions": [],
113    "sources": [
114        {
115            "@id": "/sources/banner-health/",
116            "status": "released",
117            "title": "Banner Health"
118        }
119    ],
120    "status": "preview",
121    "submitted_by": {
122        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
123        "title": "Ryan Corces"
124    },
125    "summary": "Homo sapiens (male, 86 years) cerebellar cortex tissue",
126    "taxa": "Homo sapiens",
127    "upper_bound_age": 86,
128    "upper_bound_age_in_hours": 753360,
129    "uuid": "e34f8096-bc7e-4ab7-96b2-fd9d49f061fa",
130    "virtual": false
131}