{
"@context": "/terms/",
"@id": "/tissues/IGVFSM9074JGLJ/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9074JGLJ",
"age": "88",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN1344_CING_B1"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM9074JGLJ](/tissues/IGVFSM9074JGLJ/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM9074JGLJ/"
},
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM9074JGLJ](/tissues/IGVFSM9074JGLJ/) has in progress subobject phenotype term [DOID_0080832](/phenotype-terms/DOID_0080832/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM9074JGLJ/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM9074JGLJ](/tissues/IGVFSM9074JGLJ/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM9074JGLJ/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T12:57:12.588381+00:00",
"date_obtained": "2022-10-04",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO0180JQCL/",
"accession": "IGVFDO0180JQCL",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS3200KMON/",
"accession": "IGVFDS3200KMON",
"aliases": [
"igvf:corces_measurementSet_X005_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5901XMYG/",
"accession": "IGVFDS5901XMYG",
"aliases": [
"igvf:corces_measurementSet_X005_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8054AHNJ/",
"accession": "IGVFDS8054AHNJ",
"aliases": [
"igvf:corces_measurementSet_X005_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8119MEID/",
"accession": "IGVFDS8119MEID",
"aliases": [
"igvf:corces_measurementSet_X005_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6220HECG/",
"accession": "IGVFDS6220HECG",
"aliases": [
"igvf:corces_measurementSet_X005_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2328NLDU/",
"accession": "IGVFDS2328NLDU",
"aliases": [
"igvf:corces_measurementSet_X005_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3572LAIM/",
"accession": "IGVFDS3572LAIM",
"aliases": [
"igvf:corces_measurementSet_X005_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2253HXOS/",
"accession": "IGVFDS2253HXOS",
"aliases": [
"igvf:corces_measurementSet_X005_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9627VAJD/",
"accession": "IGVFDS9627VAJD",
"aliases": [
"igvf:corces_measurementSet_X005_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0104JXQJ/",
"accession": "IGVFDS0104JXQJ",
"aliases": [
"igvf:corces_measurementSet_X005_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1493FGGS/",
"accession": "IGVFDS1493FGGS",
"aliases": [
"igvf:corces_measurementSet_X005_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8965MWPW/",
"accession": "IGVFDS8965MWPW",
"aliases": [
"igvf:corces_measurementSet_X005_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6879FAZM/",
"accession": "IGVFDS6879FAZM",
"aliases": [
"igvf:corces_measurementSet_X005_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9679YVOU/",
"accession": "IGVFDS9679YVOU",
"aliases": [
"igvf:corces_measurementSet_X005_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1448UYDZ/",
"accession": "IGVFDS1448UYDZ",
"aliases": [
"igvf:corces_measurementSet_X005_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7244FXKA/",
"accession": "IGVFDS7244FXKA",
"aliases": [
"igvf:corces_measurementSet_X005_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5924IYTA/",
"accession": "IGVFDS5924IYTA",
"aliases": [
"igvf:corces_measurementSet_RP020_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4772OGMJ/",
"accession": "IGVFDS4772OGMJ",
"aliases": [
"igvf:corces_measurementSet_RP020_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9492OFMM/",
"accession": "IGVFDS9492OFMM",
"aliases": [
"igvf:corces_measurementSet_RP020_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6715SKDT/",
"accession": "IGVFDS6715SKDT",
"aliases": [
"igvf:corces_measurementSet_RP020_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0580MSQQ/",
"accession": "IGVFDS0580MSQQ",
"aliases": [
"igvf:corces_measurementSet_RP020_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4662SOHV/",
"accession": "IGVFDS4662SOHV",
"aliases": [
"igvf:corces_measurementSet_RP020_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4171ULFR/",
"accession": "IGVFDS4171ULFR",
"aliases": [
"igvf:corces_measurementSet_RP020_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0646UHCO/",
"accession": "IGVFDS0646UHCO",
"aliases": [
"igvf:corces_measurementSet_RP020_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 88,
"lower_bound_age_in_hours": 770880,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM6709GBQC/",
"accession": "IGVFSM6709GBQC",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7229CBLF/",
"accession": "IGVFSM7229CBLF",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6427JBTA/",
"accession": "IGVFSM6427JBTA",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2834NWJT/",
"accession": "IGVFSM2834NWJT",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0319SKVZ/",
"accession": "IGVFSM0319SKVZ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM5971KNFX/",
"accession": "IGVFSM5971KNFX",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4397IWWF/",
"accession": "IGVFSM4397IWWF",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM5849MWXQ/",
"accession": "IGVFSM5849MWXQ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7245NHUU/",
"accession": "IGVFSM7245NHUU",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9011XOSL/",
"accession": "IGVFSM9011XOSL",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9612VWVL/",
"accession": "IGVFSM9612VWVL",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2478QXUD/",
"accession": "IGVFSM2478QXUD",
"status": "preview"
}
],
"origin_of": [],
"part_of": "/tissues/IGVFSM2170MWNT/",
"parts": [],
"pmi": 240,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002740/",
"status": "preview",
"term_name": "posterior cingulate gyrus"
}
],
"schema_version": "21",
"sex": "female",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (female, 88 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment",
"taxa": "Homo sapiens",
"upper_bound_age": 88,
"upper_bound_age_in_hours": 770880,
"uuid": "22f93cfd-f61e-4e6f-82f4-a974188da79d",
"virtual": false
}