left cerebral cortex — IGVFSM9059AKNM

released
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM9059AKNM/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM9059AKNM",
11    "age": "10",
12    "age_units": "week",
13    "aliases": [
14        "ansuman-satpathy:102_CASTJ_10F_left_cortex"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "NTR term ID",
20                "detail": "Sample term for [NTR_0000646](/sample-terms/NTR_0000646/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_ntr_term_id",
24                "path": "/sample-terms/NTR_0000646/"
25            },
26            {
27                "category": "missing publication",
28                "detail": "Tissue [IGVFSM9059AKNM](/tissues/IGVFSM9059AKNM/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_sample_missing_publication",
32                "path": "/tissues/IGVFSM9059AKNM/"
33            }
34        ]
35    },
36    "award": {
37        "@id": "/awards/HG012076/",
38        "component": "mapping"
39    },
40    "classifications": [
41        "tissue"
42    ],
43    "creation_timestamp": "2024-07-23T00:33:30.148004+00:00",
44    "donors": [
45        {
46            "@id": "/rodent-donors/IGVFDO5114NYSN/",
47            "accession": "IGVFDO5114NYSN",
48            "status": "released",
49            "strain": "CAST/EiJ"
50        }
51    ],
52    "file_sets": [
53        {
54            "@id": "/measurement-sets/IGVFDS7477NVAD/",
55            "accession": "IGVFDS7477NVAD",
56            "aliases": [
57                "ansuman-satpathy:snRNA-seq_mouse_bridge_102"
58            ],
59            "file_set_type": "experimental data",
60            "lab": {
61                "title": "Ansuman Satpathy, Stanford"
62            },
63            "preferred_assay_title": "10x multiome",
64            "status": "released",
65            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
66        },
67        {
68            "@id": "/measurement-sets/IGVFDS0412WLCW/",
69            "accession": "IGVFDS0412WLCW",
70            "aliases": [
71                "ansuman-satpathy:snATAC-seq_mouse_bridge_102"
72            ],
73            "file_set_type": "experimental data",
74            "lab": {
75                "title": "Ansuman Satpathy, Stanford"
76            },
77            "preferred_assay_title": "10x multiome",
78            "status": "released",
79            "summary": "single-nucleus ATAC-seq (10x multiome)"
80        },
81        {
82            "@id": "/analysis-sets/IGVFDS5230RAFR/",
83            "accession": "IGVFDS5230RAFR",
84            "file_set_type": "intermediate analysis",
85            "lab": {
86                "title": "Ansuman Satpathy, Stanford"
87            },
88            "status": "in progress",
89            "summary": "10x multiome"
90        },
91        {
92            "@id": "/analysis-sets/IGVFDS5717EBEY/",
93            "accession": "IGVFDS5717EBEY",
94            "aliases": [
95                "ansuman-satpathy:bridge_brain_round1_analysis_set"
96            ],
97            "file_set_type": "intermediate analysis",
98            "lab": {
99                "title": "Ansuman Satpathy, Stanford"
100            },
101            "status": "in progress",
102            "summary": "10x multiome: fragments, index, raw feature barcode matrix"
103        },
104        {
105            "@id": "/analysis-sets/IGVFDS6347FMLT/",
106            "accession": "IGVFDS6347FMLT",
107            "aliases": [
108                "ansuman-satpathy:bridge_brain_round1_102"
109            ],
110            "file_set_type": "intermediate analysis",
111            "lab": {
112                "title": "Ansuman Satpathy, Stanford"
113            },
114            "status": "in progress",
115            "summary": "10x multiome"
116        }
117    ],
118    "institutional_certificates": [],
119    "lab": {
120        "@id": "/labs/ansuman-satpathy/",
121        "title": "Ansuman Satpathy, Stanford"
122    },
123    "lower_bound_age": 10,
124    "lower_bound_age_in_hours": 1680,
125    "multiplexed_in": [],
126    "origin_of": [],
127    "parts": [],
128    "pooled_in": [],
129    "release_timestamp": "2025-03-07T01:18:35.079034+00:00",
130    "sample_terms": [
131        {
132            "@id": "/sample-terms/NTR_0000646/",
133            "status": "released",
134            "term_name": "left cerebral cortex"
135        }
136    ],
137    "schema_version": "21",
138    "sex": "female",
139    "sorted_fractions": [],
140    "sources": [
141        {
142            "@id": "/sources/jackson-labs/",
143            "status": "released",
144            "title": "The Jackson Laboratory"
145        }
146    ],
147    "status": "released",
148    "submitted_by": {
149        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
150        "title": "Christopher Mcginnis"
151    },
152    "summary": "Mus musculus CAST/EiJ (female, 10 weeks) left cerebral cortex tissue",
153    "taxa": "Mus musculus",
154    "upper_bound_age": 10,
155    "upper_bound_age_in_hours": 1680,
156    "uuid": "fd0b88d2-f1d7-4301-a354-dd615e875cf0",
157    "virtual": false
158}