middle temporal gyrus — IGVFSM8994YZRW

preview
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM8994YZRW/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM8994YZRW",
11    "age": "84",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN2118_MTG"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM8994YZRW](/tissues/IGVFSM8994YZRW/) has in progress subobject phenotype term [DOID_0080832](/phenotype-terms/DOID_0080832/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM8994YZRW/"
25            },
26            {
27                "category": "mismatched status",
28                "detail": "Preview tissue [IGVFSM8994YZRW](/tissues/IGVFSM8994YZRW/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_item_status",
32                "path": "/tissues/IGVFSM8994YZRW/"
33            },
34            {
35                "category": "missing CCF ID",
36                "detail": "Tissue [IGVFSM8994YZRW](/tissues/IGVFSM8994YZRW/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
37                "level": 30,
38                "level_name": "INTERNAL_ACTION",
39                "name": "audit_tissue_ccf_id",
40                "path": "/tissues/IGVFSM8994YZRW/"
41            }
42        ]
43    },
44    "award": {
45        "@id": "/awards/HG012076/",
46        "component": "mapping"
47    },
48    "classifications": [
49        "tissue"
50    ],
51    "creation_timestamp": "2025-03-19T04:09:28.560998+00:00",
52    "date_obtained": "2022-11-10",
53    "disease_terms": [
54        {
55            "@id": "/phenotype-terms/DOID_14330/",
56            "status": "in progress",
57            "term_name": "Parkinson's disease"
58        },
59        {
60            "@id": "/phenotype-terms/DOID_0080832/",
61            "status": "in progress",
62            "term_name": "mild cognitive impairment"
63        }
64    ],
65    "donors": [
66        {
67            "@id": "/human-donors/IGVFDO6489DOPG/",
68            "accession": "IGVFDO6489DOPG",
69            "ethnicities": [
70                "European"
71            ],
72            "status": "preview"
73        }
74    ],
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81            ],
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83            "lab": {
84                "title": "Ryan Corces, Gladstone Institute UCSF"
85            },
86            "preferred_assay_title": "10x multiome",
87            "status": "preview",
88            "summary": "single-nucleus ATAC-seq (10x multiome)"
89        },
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101            "status": "preview",
102            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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115            "status": "preview",
116            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
117        },
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125            "lab": {
126                "title": "Ryan Corces, Gladstone Institute UCSF"
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128            "preferred_assay_title": "10x multiome",
129            "status": "preview",
130            "summary": "single-nucleus ATAC-seq (10x multiome)"
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140                "title": "Ryan Corces, Gladstone Institute UCSF"
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142            "preferred_assay_title": "10x multiome",
143            "status": "preview",
144            "summary": "single-nucleus ATAC-seq (10x multiome)"
145        },
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154                "title": "Ryan Corces, Gladstone Institute UCSF"
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158            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
159        },
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164                "igvf:corces_measurementSet_X015_G4_ATAC"
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167            "lab": {
168                "title": "Ryan Corces, Gladstone Institute UCSF"
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172            "summary": "single-nucleus ATAC-seq (10x multiome)"
173        },
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182                "title": "Ryan Corces, Gladstone Institute UCSF"
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185            "status": "preview",
186            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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196                "title": "Ryan Corces, Gladstone Institute UCSF"
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199            "status": "preview",
200            "summary": "single-nucleus ATAC-seq (10x multiome)"
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210                "title": "Ryan Corces, Gladstone Institute UCSF"
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214            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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223            "lab": {
224                "title": "Ryan Corces, Gladstone Institute UCSF"
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227            "status": "preview",
228            "summary": "single-nucleus ATAC-seq (10x multiome)"
229        },
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234                "igvf:corces_measurementSet_X015_G1_RNA"
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237            "lab": {
238                "title": "Ryan Corces, Gladstone Institute UCSF"
239            },
240            "preferred_assay_title": "10x multiome",
241            "status": "preview",
242            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
243        },
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249            ],
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251            "lab": {
252                "title": "Ryan Corces, Gladstone Institute UCSF"
253            },
254            "preferred_assay_title": "10x multiome",
255            "status": "preview",
256            "summary": "single-nucleus ATAC-seq (10x multiome)"
257        },
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260            "accession": "IGVFDS0289RYKJ",
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262                "igvf:corces_measurementSet_X015_G6_RNA"
263            ],
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266                "title": "Ryan Corces, Gladstone Institute UCSF"
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280                "title": "Ryan Corces, Gladstone Institute UCSF"
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284            "summary": "single-nucleus ATAC-seq (10x multiome)"
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290                "igvf:corces_measurementSet_X015_G8_RNA"
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294                "title": "Ryan Corces, Gladstone Institute UCSF"
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298            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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308                "title": "Ryan Corces, Gladstone Institute UCSF"
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312            "summary": "single-nucleus ATAC-seq (10x multiome)"
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321            "lab": {
322                "title": "Ryan Corces, Gladstone Institute UCSF"
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324            "preferred_assay_title": "10x multiome",
325            "status": "preview",
326            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
327        },
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330            "accession": "IGVFDS8030DHLN",
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335            "lab": {
336                "title": "Ryan Corces, Gladstone Institute UCSF"
337            },
338            "preferred_assay_title": "10x multiome",
339            "status": "preview",
340            "summary": "single-nucleus ATAC-seq (10x multiome)"
341        },
342        {
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344            "accession": "IGVFDS6017DONZ",
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346                "igvf:corces_measurementSet_RP021_G5_RNA"
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349            "lab": {
350                "title": "Ryan Corces, Gladstone Institute UCSF"
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353            "status": "preview",
354            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
355        },
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364                "title": "Ryan Corces, Gladstone Institute UCSF"
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368            "summary": "single-nucleus ATAC-seq (10x multiome)"
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378                "title": "Ryan Corces, Gladstone Institute UCSF"
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381            "status": "preview",
382            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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424            "summary": "single-nucleus ATAC-seq (10x multiome)"
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438            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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452            "summary": "single-nucleus ATAC-seq (10x multiome)"
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461            "lab": {
462                "title": "Ryan Corces, Gladstone Institute UCSF"
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465            "status": "preview",
466            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
467        }
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469    "institutional_certificates": [
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473            "controlled_access": false,
474            "status": "in progress"
475        }
476    ],
477    "lab": {
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479        "title": "Ryan Corces, Gladstone Institute UCSF"
480    },
481    "lower_bound_age": 84,
482    "lower_bound_age_in_hours": 735840,
483    "multiplexed_in": [
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485            "@id": "/multiplexed-samples/IGVFSM9749BFVC/",
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512            "status": "preview"
513        },
514        {
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527            "status": "preview"
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529        {
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532            "status": "preview"
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537            "status": "preview"
538        },
539        {
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541            "accession": "IGVFSM8178OHJY",
542            "status": "preview"
543        },
544        {
545            "@id": "/multiplexed-samples/IGVFSM0973MXCP/",
546            "accession": "IGVFSM0973MXCP",
547            "status": "preview"
548        },
549        {
550            "@id": "/multiplexed-samples/IGVFSM0125OEIT/",
551            "accession": "IGVFSM0125OEIT",
552            "status": "preview"
553        }
554    ],
555    "origin_of": [],
556    "parts": [],
557    "pmi": 300,
558    "pmi_units": "minute",
559    "pooled_in": [],
560    "preservation_method": "flash-freezing",
561    "protocols": [
562        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
563    ],
564    "sample_terms": [
565        {
566            "@id": "/sample-terms/UBERON_0002771/",
567            "status": "preview",
568            "term_name": "middle temporal gyrus"
569        }
570    ],
571    "schema_version": "21",
572    "sex": "female",
573    "sorted_fractions": [],
574    "sources": [
575        {
576            "@id": "/sources/banner-health/",
577            "status": "released",
578            "title": "Banner Health"
579        }
580    ],
581    "status": "preview",
582    "submitted_by": {
583        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
584        "title": "Ryan Corces"
585    },
586    "summary": "Homo sapiens (female, 84 years) middle temporal gyrus tissue associated with Parkinson's disease, mild cognitive impairment",
587    "taxa": "Homo sapiens",
588    "upper_bound_age": 84,
589    "upper_bound_age_in_hours": 735840,
590    "uuid": "49a884c4-bc4c-4e06-a9b9-e7c03c7178c6",
591    "virtual": false
592}