posterior cingulate gyrus — IGVFSM8782SGGI

preview
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM8782SGGI/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM8782SGGI",
11    "age": "92",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1644_CING"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM8782SGGI](/tissues/IGVFSM8782SGGI/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM8782SGGI/"
25            },
26            {
27                "category": "mismatched status",
28                "detail": "Preview tissue [IGVFSM8782SGGI](/tissues/IGVFSM8782SGGI/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_item_status",
32                "path": "/tissues/IGVFSM8782SGGI/"
33            },
34            {
35                "category": "mismatched status",
36                "detail": "Preview tissue [IGVFSM8782SGGI](/tissues/IGVFSM8782SGGI/) has in progress subobject phenotype term [DOID_0080832](/phenotype-terms/DOID_0080832/).",
37                "level": 30,
38                "level_name": "INTERNAL_ACTION",
39                "name": "audit_item_status",
40                "path": "/tissues/IGVFSM8782SGGI/"
41            },
42            {
43                "category": "missing CCF ID",
44                "detail": "Tissue [IGVFSM8782SGGI](/tissues/IGVFSM8782SGGI/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
45                "level": 30,
46                "level_name": "INTERNAL_ACTION",
47                "name": "audit_tissue_ccf_id",
48                "path": "/tissues/IGVFSM8782SGGI/"
49            }
50        ]
51    },
52    "award": {
53        "@id": "/awards/HG012076/",
54        "component": "mapping"
55    },
56    "classifications": [
57        "tissue"
58    ],
59    "creation_timestamp": "2025-03-19T04:10:01.912603+00:00",
60    "date_obtained": "2022-11-22",
61    "disease_terms": [
62        {
63            "@id": "/phenotype-terms/DOID_14330/",
64            "status": "in progress",
65            "term_name": "Parkinson's disease"
66        },
67        {
68            "@id": "/phenotype-terms/DOID_9246/",
69            "status": "in progress",
70            "term_name": "cerebral amyloid angiopathy"
71        },
72        {
73            "@id": "/phenotype-terms/DOID_0080832/",
74            "status": "in progress",
75            "term_name": "mild cognitive impairment"
76        }
77    ],
78    "donors": [
79        {
80            "@id": "/human-donors/IGVFDO4438WASY/",
81            "accession": "IGVFDO4438WASY",
82            "ethnicities": [
83                "European"
84            ],
85            "status": "preview"
86        }
87    ],
88    "file_sets": [
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90            "@id": "/measurement-sets/IGVFDS4661FUFW/",
91            "accession": "IGVFDS4661FUFW",
92            "aliases": [
93                "igvf:corces_measurementSet_X018_G1_ATAC"
94            ],
95            "file_set_type": "experimental data",
96            "lab": {
97                "title": "Ryan Corces, Gladstone Institute UCSF"
98            },
99            "preferred_assay_title": "10x multiome",
100            "status": "preview",
101            "summary": "single-nucleus ATAC-seq (10x multiome)"
102        },
103        {
104            "@id": "/measurement-sets/IGVFDS8385AJOG/",
105            "accession": "IGVFDS8385AJOG",
106            "aliases": [
107                "igvf:corces_measurementSet_X018_G1_RNA"
108            ],
109            "file_set_type": "experimental data",
110            "lab": {
111                "title": "Ryan Corces, Gladstone Institute UCSF"
112            },
113            "preferred_assay_title": "10x multiome",
114            "status": "preview",
115            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
116        },
117        {
118            "@id": "/measurement-sets/IGVFDS5398QLMU/",
119            "accession": "IGVFDS5398QLMU",
120            "aliases": [
121                "igvf:corces_measurementSet_X018_G2_ATAC"
122            ],
123            "file_set_type": "experimental data",
124            "lab": {
125                "title": "Ryan Corces, Gladstone Institute UCSF"
126            },
127            "preferred_assay_title": "10x multiome",
128            "status": "preview",
129            "summary": "single-nucleus ATAC-seq (10x multiome)"
130        },
131        {
132            "@id": "/measurement-sets/IGVFDS3606KJNK/",
133            "accession": "IGVFDS3606KJNK",
134            "aliases": [
135                "igvf:corces_measurementSet_X018_G2_RNA"
136            ],
137            "file_set_type": "experimental data",
138            "lab": {
139                "title": "Ryan Corces, Gladstone Institute UCSF"
140            },
141            "preferred_assay_title": "10x multiome",
142            "status": "preview",
143            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
144        },
145        {
146            "@id": "/measurement-sets/IGVFDS6716ODJI/",
147            "accession": "IGVFDS6716ODJI",
148            "aliases": [
149                "igvf:corces_measurementSet_X018_G5_ATAC"
150            ],
151            "file_set_type": "experimental data",
152            "lab": {
153                "title": "Ryan Corces, Gladstone Institute UCSF"
154            },
155            "preferred_assay_title": "10x multiome",
156            "status": "preview",
157            "summary": "single-nucleus ATAC-seq (10x multiome)"
158        },
159        {
160            "@id": "/measurement-sets/IGVFDS6107ITVM/",
161            "accession": "IGVFDS6107ITVM",
162            "aliases": [
163                "igvf:corces_measurementSet_X018_G5_RNA"
164            ],
165            "file_set_type": "experimental data",
166            "lab": {
167                "title": "Ryan Corces, Gladstone Institute UCSF"
168            },
169            "preferred_assay_title": "10x multiome",
170            "status": "preview",
171            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
172        },
173        {
174            "@id": "/measurement-sets/IGVFDS7460ZJLL/",
175            "accession": "IGVFDS7460ZJLL",
176            "aliases": [
177                "igvf:corces_measurementSet_X018_G7_ATAC"
178            ],
179            "file_set_type": "experimental data",
180            "lab": {
181                "title": "Ryan Corces, Gladstone Institute UCSF"
182            },
183            "preferred_assay_title": "10x multiome",
184            "status": "preview",
185            "summary": "single-nucleus ATAC-seq (10x multiome)"
186        },
187        {
188            "@id": "/measurement-sets/IGVFDS4267COKK/",
189            "accession": "IGVFDS4267COKK",
190            "aliases": [
191                "igvf:corces_measurementSet_X018_G7_RNA"
192            ],
193            "file_set_type": "experimental data",
194            "lab": {
195                "title": "Ryan Corces, Gladstone Institute UCSF"
196            },
197            "preferred_assay_title": "10x multiome",
198            "status": "preview",
199            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
200        },
201        {
202            "@id": "/measurement-sets/IGVFDS8509DVUL/",
203            "accession": "IGVFDS8509DVUL",
204            "aliases": [
205                "igvf:corces_measurementSet_X018_G8_ATAC"
206            ],
207            "file_set_type": "experimental data",
208            "lab": {
209                "title": "Ryan Corces, Gladstone Institute UCSF"
210            },
211            "preferred_assay_title": "10x multiome",
212            "status": "preview",
213            "summary": "single-nucleus ATAC-seq (10x multiome)"
214        },
215        {
216            "@id": "/measurement-sets/IGVFDS5209HPZQ/",
217            "accession": "IGVFDS5209HPZQ",
218            "aliases": [
219                "igvf:corces_measurementSet_X018_G8_RNA"
220            ],
221            "file_set_type": "experimental data",
222            "lab": {
223                "title": "Ryan Corces, Gladstone Institute UCSF"
224            },
225            "preferred_assay_title": "10x multiome",
226            "status": "preview",
227            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
228        },
229        {
230            "@id": "/measurement-sets/IGVFDS8282BSIR/",
231            "accession": "IGVFDS8282BSIR",
232            "aliases": [
233                "igvf:corces_measurementSet_X018_G3_ATAC"
234            ],
235            "file_set_type": "experimental data",
236            "lab": {
237                "title": "Ryan Corces, Gladstone Institute UCSF"
238            },
239            "preferred_assay_title": "10x multiome",
240            "status": "preview",
241            "summary": "single-nucleus ATAC-seq (10x multiome)"
242        },
243        {
244            "@id": "/measurement-sets/IGVFDS6864WUVY/",
245            "accession": "IGVFDS6864WUVY",
246            "aliases": [
247                "igvf:corces_measurementSet_X018_G3_RNA"
248            ],
249            "file_set_type": "experimental data",
250            "lab": {
251                "title": "Ryan Corces, Gladstone Institute UCSF"
252            },
253            "preferred_assay_title": "10x multiome",
254            "status": "preview",
255            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
256        },
257        {
258            "@id": "/measurement-sets/IGVFDS3229AGXN/",
259            "accession": "IGVFDS3229AGXN",
260            "aliases": [
261                "igvf:corces_measurementSet_X018_G4_ATAC"
262            ],
263            "file_set_type": "experimental data",
264            "lab": {
265                "title": "Ryan Corces, Gladstone Institute UCSF"
266            },
267            "preferred_assay_title": "10x multiome",
268            "status": "preview",
269            "summary": "single-nucleus ATAC-seq (10x multiome)"
270        },
271        {
272            "@id": "/measurement-sets/IGVFDS3746KFOG/",
273            "accession": "IGVFDS3746KFOG",
274            "aliases": [
275                "igvf:corces_measurementSet_X018_G4_RNA"
276            ],
277            "file_set_type": "experimental data",
278            "lab": {
279                "title": "Ryan Corces, Gladstone Institute UCSF"
280            },
281            "preferred_assay_title": "10x multiome",
282            "status": "preview",
283            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
284        },
285        {
286            "@id": "/measurement-sets/IGVFDS8237XHKO/",
287            "accession": "IGVFDS8237XHKO",
288            "aliases": [
289                "igvf:corces_measurementSet_X018_G6_ATAC"
290            ],
291            "file_set_type": "experimental data",
292            "lab": {
293                "title": "Ryan Corces, Gladstone Institute UCSF"
294            },
295            "preferred_assay_title": "10x multiome",
296            "status": "preview",
297            "summary": "single-nucleus ATAC-seq (10x multiome)"
298        },
299        {
300            "@id": "/measurement-sets/IGVFDS3609ZOOP/",
301            "accession": "IGVFDS3609ZOOP",
302            "aliases": [
303                "igvf:corces_measurementSet_X018_G6_RNA"
304            ],
305            "file_set_type": "experimental data",
306            "lab": {
307                "title": "Ryan Corces, Gladstone Institute UCSF"
308            },
309            "preferred_assay_title": "10x multiome",
310            "status": "preview",
311            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
312        },
313        {
314            "@id": "/measurement-sets/IGVFDS4482JTLK/",
315            "accession": "IGVFDS4482JTLK",
316            "aliases": [
317                "igvf:corces_measurementSet_RP021_G2_ATAC"
318            ],
319            "file_set_type": "experimental data",
320            "lab": {
321                "title": "Ryan Corces, Gladstone Institute UCSF"
322            },
323            "preferred_assay_title": "10x multiome",
324            "status": "preview",
325            "summary": "single-nucleus ATAC-seq (10x multiome)"
326        },
327        {
328            "@id": "/measurement-sets/IGVFDS9248YEGX/",
329            "accession": "IGVFDS9248YEGX",
330            "aliases": [
331                "igvf:corces_measurementSet_RP021_G2_RNA"
332            ],
333            "file_set_type": "experimental data",
334            "lab": {
335                "title": "Ryan Corces, Gladstone Institute UCSF"
336            },
337            "preferred_assay_title": "10x multiome",
338            "status": "preview",
339            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
340        },
341        {
342            "@id": "/measurement-sets/IGVFDS8030DHLN/",
343            "accession": "IGVFDS8030DHLN",
344            "aliases": [
345                "igvf:corces_measurementSet_RP021_G5_ATAC"
346            ],
347            "file_set_type": "experimental data",
348            "lab": {
349                "title": "Ryan Corces, Gladstone Institute UCSF"
350            },
351            "preferred_assay_title": "10x multiome",
352            "status": "preview",
353            "summary": "single-nucleus ATAC-seq (10x multiome)"
354        },
355        {
356            "@id": "/measurement-sets/IGVFDS6017DONZ/",
357            "accession": "IGVFDS6017DONZ",
358            "aliases": [
359                "igvf:corces_measurementSet_RP021_G5_RNA"
360            ],
361            "file_set_type": "experimental data",
362            "lab": {
363                "title": "Ryan Corces, Gladstone Institute UCSF"
364            },
365            "preferred_assay_title": "10x multiome",
366            "status": "preview",
367            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
368        },
369        {
370            "@id": "/measurement-sets/IGVFDS8445THOS/",
371            "accession": "IGVFDS8445THOS",
372            "aliases": [
373                "igvf:corces_measurementSet_RP021_G4_ATAC"
374            ],
375            "file_set_type": "experimental data",
376            "lab": {
377                "title": "Ryan Corces, Gladstone Institute UCSF"
378            },
379            "preferred_assay_title": "10x multiome",
380            "status": "preview",
381            "summary": "single-nucleus ATAC-seq (10x multiome)"
382        },
383        {
384            "@id": "/measurement-sets/IGVFDS6950EWLX/",
385            "accession": "IGVFDS6950EWLX",
386            "aliases": [
387                "igvf:corces_measurementSet_RP021_G4_RNA"
388            ],
389            "file_set_type": "experimental data",
390            "lab": {
391                "title": "Ryan Corces, Gladstone Institute UCSF"
392            },
393            "preferred_assay_title": "10x multiome",
394            "status": "preview",
395            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
396        },
397        {
398            "@id": "/measurement-sets/IGVFDS0829QLBI/",
399            "accession": "IGVFDS0829QLBI",
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401                "igvf:corces_measurementSet_RP021_G3_RNA"
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404            "lab": {
405                "title": "Ryan Corces, Gladstone Institute UCSF"
406            },
407            "preferred_assay_title": "10x multiome",
408            "status": "preview",
409            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
410        },
411        {
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414            "aliases": [
415                "igvf:corces_measurementSet_RP021_G3_ATAC"
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418            "lab": {
419                "title": "Ryan Corces, Gladstone Institute UCSF"
420            },
421            "preferred_assay_title": "10x multiome",
422            "status": "preview",
423            "summary": "single-nucleus ATAC-seq (10x multiome)"
424        },
425        {
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427            "accession": "IGVFDS8175EHCI",
428            "aliases": [
429                "igvf:corces_measurementSet_RP021_G1_ATAC"
430            ],
431            "file_set_type": "experimental data",
432            "lab": {
433                "title": "Ryan Corces, Gladstone Institute UCSF"
434            },
435            "preferred_assay_title": "10x multiome",
436            "status": "preview",
437            "summary": "single-nucleus ATAC-seq (10x multiome)"
438        },
439        {
440            "@id": "/measurement-sets/IGVFDS1245GYAG/",
441            "accession": "IGVFDS1245GYAG",
442            "aliases": [
443                "igvf:corces_measurementSet_RP021_G1_RNA"
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446            "lab": {
447                "title": "Ryan Corces, Gladstone Institute UCSF"
448            },
449            "preferred_assay_title": "10x multiome",
450            "status": "preview",
451            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
452        },
453        {
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455            "accession": "IGVFDS9871NUDC",
456            "aliases": [
457                "igvf:corces_measurementSet_RP021_G6_ATAC"
458            ],
459            "file_set_type": "experimental data",
460            "lab": {
461                "title": "Ryan Corces, Gladstone Institute UCSF"
462            },
463            "preferred_assay_title": "10x multiome",
464            "status": "preview",
465            "summary": "single-nucleus ATAC-seq (10x multiome)"
466        },
467        {
468            "@id": "/measurement-sets/IGVFDS1354SHUU/",
469            "accession": "IGVFDS1354SHUU",
470            "aliases": [
471                "igvf:corces_measurementSet_RP021_G6_RNA"
472            ],
473            "file_set_type": "experimental data",
474            "lab": {
475                "title": "Ryan Corces, Gladstone Institute UCSF"
476            },
477            "preferred_assay_title": "10x multiome",
478            "status": "preview",
479            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
480        }
481    ],
482    "institutional_certificates": [
483        {
484            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
485            "certificate_identifier": "IP115-05",
486            "controlled_access": false,
487            "status": "in progress"
488        }
489    ],
490    "lab": {
491        "@id": "/labs/ryan-corces/",
492        "title": "Ryan Corces, Gladstone Institute UCSF"
493    },
494    "lower_bound_age": 92,
495    "lower_bound_age_in_hours": 805920,
496    "multiplexed_in": [
497        {
498            "@id": "/multiplexed-samples/IGVFSM3747OUVO/",
499            "accession": "IGVFSM3747OUVO",
500            "status": "preview"
501        },
502        {
503            "@id": "/multiplexed-samples/IGVFSM9798GLTM/",
504            "accession": "IGVFSM9798GLTM",
505            "status": "preview"
506        },
507        {
508            "@id": "/multiplexed-samples/IGVFSM7341PDKY/",
509            "accession": "IGVFSM7341PDKY",
510            "status": "preview"
511        },
512        {
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515            "status": "preview"
516        },
517        {
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519            "accession": "IGVFSM5218YFIX",
520            "status": "preview"
521        },
522        {
523            "@id": "/multiplexed-samples/IGVFSM3692IOZZ/",
524            "accession": "IGVFSM3692IOZZ",
525            "status": "preview"
526        },
527        {
528            "@id": "/multiplexed-samples/IGVFSM7256WFWF/",
529            "accession": "IGVFSM7256WFWF",
530            "status": "preview"
531        },
532        {
533            "@id": "/multiplexed-samples/IGVFSM8022FKWE/",
534            "accession": "IGVFSM8022FKWE",
535            "status": "preview"
536        },
537        {
538            "@id": "/multiplexed-samples/IGVFSM2242CVZD/",
539            "accession": "IGVFSM2242CVZD",
540            "status": "preview"
541        },
542        {
543            "@id": "/multiplexed-samples/IGVFSM3191ZJBV/",
544            "accession": "IGVFSM3191ZJBV",
545            "status": "preview"
546        },
547        {
548            "@id": "/multiplexed-samples/IGVFSM6537ROKX/",
549            "accession": "IGVFSM6537ROKX",
550            "status": "preview"
551        },
552        {
553            "@id": "/multiplexed-samples/IGVFSM8178OHJY/",
554            "accession": "IGVFSM8178OHJY",
555            "status": "preview"
556        },
557        {
558            "@id": "/multiplexed-samples/IGVFSM0973MXCP/",
559            "accession": "IGVFSM0973MXCP",
560            "status": "preview"
561        },
562        {
563            "@id": "/multiplexed-samples/IGVFSM0125OEIT/",
564            "accession": "IGVFSM0125OEIT",
565            "status": "preview"
566        }
567    ],
568    "origin_of": [],
569    "parts": [],
570    "pmi": 145,
571    "pmi_units": "minute",
572    "pooled_in": [],
573    "preservation_method": "flash-freezing",
574    "protocols": [
575        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
576    ],
577    "sample_terms": [
578        {
579            "@id": "/sample-terms/UBERON_0002740/",
580            "status": "preview",
581            "term_name": "posterior cingulate gyrus"
582        }
583    ],
584    "schema_version": "21",
585    "sex": "male",
586    "sorted_fractions": [],
587    "sources": [
588        {
589            "@id": "/sources/banner-health/",
590            "status": "released",
591            "title": "Banner Health"
592        }
593    ],
594    "status": "preview",
595    "submitted_by": {
596        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
597        "title": "Ryan Corces"
598    },
599    "summary": "Homo sapiens (male, 92 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment",
600    "taxa": "Homo sapiens",
601    "upper_bound_age": 92,
602    "upper_bound_age_in_hours": 805920,
603    "uuid": "86577cdd-e271-42f7-9843-ee64a6eaf4a6",
604    "virtual": false
605}