brain — IGVFSM8719IQYM

released
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM8719IQYM/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM8719IQYM",
11    "age": "unknown",
12    "aliases": [
13        "bradley-bernstein:BioSam 4561_SS-PKR 130",
14        "buenrostro-bernstein:BioSam 4561_SS-PKR 130"
15    ],
16    "audit": {
17        "WARNING": [
18            {
19                "category": "missing age",
20                "detail": "Tissue [IGVFSM8719IQYM](/tissues/IGVFSM8719IQYM/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
21                "level": 40,
22                "level_name": "WARNING",
23                "name": "audit_biosample_age",
24                "path": "/tissues/IGVFSM8719IQYM/"
25            }
26        ]
27    },
28    "award": {
29        "@id": "/awards/HG011986/",
30        "component": "mapping"
31    },
32    "cellular_sub_pool": "SS-PKR 130",
33    "classifications": [
34        "tissue"
35    ],
36    "creation_timestamp": "2023-08-28T17:56:16.739590+00:00",
37    "donors": [
38        {
39            "@id": "/rodent-donors/IGVFDO1318PLKS/",
40            "accession": "IGVFDO1318PLKS",
41            "status": "released",
42            "strain": "C57BL/6"
43        }
44    ],
45    "file_sets": [
46        {
47            "@id": "/measurement-sets/IGVFDS3032KHHX/",
48            "accession": "IGVFDS3032KHHX",
49            "aliases": [
50                "bradley-bernstein:scATAC Lib 113",
51                "buenrostro-bernstein:scATAC Lib 113"
52            ],
53            "file_set_type": "experimental data",
54            "lab": {
55                "title": "Jason Buenrostro, Broad"
56            },
57            "preferred_assay_title": "SHARE-seq",
58            "status": "released",
59            "summary": "single-cell ATAC-seq (SHARE-seq)"
60        },
61        {
62            "@id": "/measurement-sets/IGVFDS8556WPGM/",
63            "accession": "IGVFDS8556WPGM",
64            "aliases": [
65                "bradley-bernstein:scATAC Lib 114",
66                "buenrostro-bernstein:scATAC Lib 114"
67            ],
68            "file_set_type": "experimental data",
69            "lab": {
70                "title": "Jason Buenrostro, Broad"
71            },
72            "preferred_assay_title": "SHARE-seq",
73            "status": "released",
74            "summary": "single-cell ATAC-seq (SHARE-seq)"
75        },
76        {
77            "@id": "/measurement-sets/IGVFDS9693BTRP/",
78            "accession": "IGVFDS9693BTRP",
79            "aliases": [
80                "bradley-bernstein:scRNA Lib 75",
81                "buenrostro-bernstein:scRNA Lib 75"
82            ],
83            "file_set_type": "experimental data",
84            "lab": {
85                "title": "Jason Buenrostro, Broad"
86            },
87            "preferred_assay_title": "SHARE-seq",
88            "status": "released",
89            "summary": "single-cell RNA sequencing assay (SHARE-seq)"
90        },
91        {
92            "@id": "/measurement-sets/IGVFDS0877CWMW/",
93            "accession": "IGVFDS0877CWMW",
94            "aliases": [
95                "bradley-bernstein:scRNA Lib 74",
96                "buenrostro-bernstein:scRNA Lib 74"
97            ],
98            "file_set_type": "experimental data",
99            "lab": {
100                "title": "Jason Buenrostro, Broad"
101            },
102            "preferred_assay_title": "SHARE-seq",
103            "status": "released",
104            "summary": "single-cell RNA sequencing assay (SHARE-seq)"
105        },
106        {
107            "@id": "/measurement-sets/IGVFDS4704VICJ/",
108            "accession": "IGVFDS4704VICJ",
109            "aliases": [
110                "bradley-bernstein:scATAC Lib 112",
111                "buenrostro-bernstein:scATAC Lib 112"
112            ],
113            "file_set_type": "experimental data",
114            "lab": {
115                "title": "Jason Buenrostro, Broad"
116            },
117            "preferred_assay_title": "SHARE-seq",
118            "status": "released",
119            "summary": "single-cell ATAC-seq (SHARE-seq)"
120        },
121        {
122            "@id": "/measurement-sets/IGVFDS6361NSJR/",
123            "accession": "IGVFDS6361NSJR",
124            "aliases": [
125                "bradley-bernstein:scRNA Lib 73",
126                "buenrostro-bernstein:scRNA Lib 73"
127            ],
128            "file_set_type": "experimental data",
129            "lab": {
130                "title": "Jason Buenrostro, Broad"
131            },
132            "preferred_assay_title": "SHARE-seq",
133            "status": "released",
134            "summary": "single-cell RNA sequencing assay (SHARE-seq)"
135        },
136        {
137            "@id": "/analysis-sets/IGVFDS0635KHHW/",
138            "accession": "IGVFDS0635KHHW",
139            "aliases": [
140                "buenrostro-bernstein:AnalysisSet_BioSam-4561_SS-PKR-130"
141            ],
142            "file_set_type": "intermediate analysis",
143            "lab": {
144                "title": "Jason Buenrostro, Broad"
145            },
146            "status": "in progress",
147            "summary": "SHARE-seq: alignments, fragments, index, sparse gene count matrix"
148        }
149    ],
150    "institutional_certificates": [],
151    "lab": {
152        "@id": "/labs/jason-buenrostro/",
153        "title": "Jason Buenrostro, Broad"
154    },
155    "multiplexed_in": [],
156    "origin_of": [],
157    "part_of": "/tissues/IGVFSM8906DBMQ/",
158    "parts": [],
159    "pooled_in": [],
160    "release_timestamp": "2025-03-28T21:18:34.512023+00:00",
161    "sample_terms": [
162        {
163            "@id": "/sample-terms/UBERON_0000955/",
164            "status": "released",
165            "term_name": "brain"
166        }
167    ],
168    "schema_version": "21",
169    "sex": "female",
170    "sorted_fractions": [],
171    "sources": [
172        {
173            "@id": "/sources/transnetyx/",
174            "status": "released",
175            "title": "Transnetyx"
176        }
177    ],
178    "status": "released",
179    "submitted_by": {
180        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
181        "title": "Siddarth Wekhande"
182    },
183    "summary": "Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)",
184    "taxa": "Mus musculus",
185    "uuid": "4e49fff9-cc92-4996-a286-31fa46efc6b4",
186    "virtual": false
187}