{
"@context": "/terms/",
"@id": "/tissues/IGVFSM8593GROQ/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8593GROQ",
"age": "80",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN1170_MTG_B2"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM8593GROQ](/tissues/IGVFSM8593GROQ/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM8593GROQ/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM8593GROQ](/tissues/IGVFSM8593GROQ/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM8593GROQ/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T13:00:13.034478+00:00",
"date_obtained": "2023-08-23",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO1627RQLG/",
"accession": "IGVFDO1627RQLG",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS7395RITD/",
"accession": "IGVFDS7395RITD",
"aliases": [
"igvf:corces_measurementSet_X056_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9051YDZS/",
"accession": "IGVFDS9051YDZS",
"aliases": [
"igvf:corces_measurementSet_X056_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3466SAJY/",
"accession": "IGVFDS3466SAJY",
"aliases": [
"igvf:corces_measurementSet_X056_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5753AZXN/",
"accession": "IGVFDS5753AZXN",
"aliases": [
"igvf:corces_measurementSet_X056_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0599HJZM/",
"accession": "IGVFDS0599HJZM",
"aliases": [
"igvf:corces_measurementSet_X056_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4110RISR/",
"accession": "IGVFDS4110RISR",
"aliases": [
"igvf:corces_measurementSet_X056_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3913YYZG/",
"accession": "IGVFDS3913YYZG",
"aliases": [
"igvf:corces_measurementSet_X056_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6302OSOF/",
"accession": "IGVFDS6302OSOF",
"aliases": [
"igvf:corces_measurementSet_X056_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9956LFKB/",
"accession": "IGVFDS9956LFKB",
"aliases": [
"igvf:corces_measurementSet_X056_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6602FWYC/",
"accession": "IGVFDS6602FWYC",
"aliases": [
"igvf:corces_measurementSet_X056_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6904QKJC/",
"accession": "IGVFDS6904QKJC",
"aliases": [
"igvf:corces_measurementSet_X056_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6989DHHC/",
"accession": "IGVFDS6989DHHC",
"aliases": [
"igvf:corces_measurementSet_X056_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1843SBYD/",
"accession": "IGVFDS1843SBYD",
"aliases": [
"igvf:corces_measurementSet_X056_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0201QKVI/",
"accession": "IGVFDS0201QKVI",
"aliases": [
"igvf:corces_measurementSet_X056_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2020PTEI/",
"accession": "IGVFDS2020PTEI",
"aliases": [
"igvf:corces_measurementSet_X056_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2341FCHD/",
"accession": "IGVFDS2341FCHD",
"aliases": [
"igvf:corces_measurementSet_X056_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 80,
"lower_bound_age_in_hours": 700800,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM4067NDEZ/",
"accession": "IGVFSM4067NDEZ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1116BOZN/",
"accession": "IGVFSM1116BOZN",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2277IYGW/",
"accession": "IGVFSM2277IYGW",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9530VDLK/",
"accession": "IGVFSM9530VDLK",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2469XBRA/",
"accession": "IGVFSM2469XBRA",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3458KTYQ/",
"accession": "IGVFSM3458KTYQ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3628YHAV/",
"accession": "IGVFSM3628YHAV",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM5894OFIJ/",
"accession": "IGVFSM5894OFIJ",
"status": "preview"
}
],
"origin_of": [],
"part_of": "/tissues/IGVFSM0830MBEI/",
"parts": [],
"pmi": 145,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Parkinson's disease",
"taxa": "Homo sapiens",
"upper_bound_age": 80,
"upper_bound_age_in_hours": 700800,
"uuid": "b1797cf8-a1cb-4417-a711-c5f538aa0983",
"virtual": false
}