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substantia nigra — IGVFSM8548LUSQ

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This object is in preview status. Metadata is subject to change until this object is released.
Summary
Homo sapiens (male, 72 years) substantia nigra tissue associated with Parkinson's disease
Sample Terms
Sex
male
Age
72 years
Post-mortem Interval
159 minutes
Preservation Method
flash-freezing
Taxa
Homo sapiens
Sources
banner-health
Date Harvested
January 18, 2023
Aliases
igvf:corces_tissue_BANN2003_SN
Protocols

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:corces_donor_BANN2003
male
Homo sapiens

File Sets

32 items
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_X029_G8_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_RP022_G2_ATAC
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_X029_G7_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP022_G2_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP022_G1_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_RP022_G4_ATAC
Ryan Corces, Gladstone Institute UCSF
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_X029_G3_ATAC
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP022_G7_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_RP022_G6_ATAC
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP022_G5_RNA
Ryan Corces, Gladstone Institute UCSF

Multiplexed In Samples

16 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 78 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 14 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 78 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 14 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 90 or above years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 78 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 14 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 78 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 14 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 78 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 14 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 90 or above years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 90 or above years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 78 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 14 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 78 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 14 more samples

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF