cerebellar cortex — IGVFSM8317YIMF

preview
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM8317YIMF/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM8317YIMF",
11    "age": "81",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN0919_CBL"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM8317YIMF](/tissues/IGVFSM8317YIMF/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM8317YIMF/"
25            },
26            {
27                "category": "mismatched status",
28                "detail": "Preview tissue [IGVFSM8317YIMF](/tissues/IGVFSM8317YIMF/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_item_status",
32                "path": "/tissues/IGVFSM8317YIMF/"
33            },
34            {
35                "category": "missing CCF ID",
36                "detail": "Tissue [IGVFSM8317YIMF](/tissues/IGVFSM8317YIMF/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
37                "level": 30,
38                "level_name": "INTERNAL_ACTION",
39                "name": "audit_tissue_ccf_id",
40                "path": "/tissues/IGVFSM8317YIMF/"
41            }
42        ]
43    },
44    "award": {
45        "@id": "/awards/HG012076/",
46        "component": "mapping"
47    },
48    "classifications": [
49        "tissue"
50    ],
51    "creation_timestamp": "2025-03-19T04:11:03.723731+00:00",
52    "date_obtained": "2023-01-04",
53    "disease_terms": [
54        {
55            "@id": "/phenotype-terms/DOID_14330/",
56            "status": "in progress",
57            "term_name": "Parkinson's disease"
58        },
59        {
60            "@id": "/phenotype-terms/DOID_9246/",
61            "status": "in progress",
62            "term_name": "cerebral amyloid angiopathy"
63        }
64    ],
65    "donors": [
66        {
67            "@id": "/human-donors/IGVFDO5410JIJT/",
68            "accession": "IGVFDO5410JIJT",
69            "ethnicities": [
70                "European"
71            ],
72            "status": "preview"
73        }
74    ],
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81            ],
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83            "lab": {
84                "title": "Ryan Corces, Gladstone Institute UCSF"
85            },
86            "preferred_assay_title": "10x multiome",
87            "status": "preview",
88            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
89        },
90        {
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93            "aliases": [
94                "igvf:corces_measurementSet_X024_G2_ATAC"
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96            "file_set_type": "experimental data",
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98                "title": "Ryan Corces, Gladstone Institute UCSF"
99            },
100            "preferred_assay_title": "10x multiome",
101            "status": "preview",
102            "summary": "single-nucleus ATAC-seq (10x multiome)"
103        },
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108                "igvf:corces_measurementSet_X024_G4_ATAC"
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112                "title": "Ryan Corces, Gladstone Institute UCSF"
113            },
114            "preferred_assay_title": "10x multiome",
115            "status": "preview",
116            "summary": "single-nucleus ATAC-seq (10x multiome)"
117        },
118        {
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121            "aliases": [
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123            ],
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125            "lab": {
126                "title": "Ryan Corces, Gladstone Institute UCSF"
127            },
128            "preferred_assay_title": "10x multiome",
129            "status": "preview",
130            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
131        },
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136                "igvf:corces_measurementSet_X024_G8_ATAC"
137            ],
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139            "lab": {
140                "title": "Ryan Corces, Gladstone Institute UCSF"
141            },
142            "preferred_assay_title": "10x multiome",
143            "status": "preview",
144            "summary": "single-nucleus ATAC-seq (10x multiome)"
145        },
146        {
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151            ],
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153            "lab": {
154                "title": "Ryan Corces, Gladstone Institute UCSF"
155            },
156            "preferred_assay_title": "10x multiome",
157            "status": "preview",
158            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
159        },
160        {
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162            "accession": "IGVFDS1895GMKC",
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164                "igvf:corces_measurementSet_X024_G1_ATAC"
165            ],
166            "file_set_type": "experimental data",
167            "lab": {
168                "title": "Ryan Corces, Gladstone Institute UCSF"
169            },
170            "preferred_assay_title": "10x multiome",
171            "status": "preview",
172            "summary": "single-nucleus ATAC-seq (10x multiome)"
173        },
174        {
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176            "accession": "IGVFDS0737MUWL",
177            "aliases": [
178                "igvf:corces_measurementSet_X024_G1_RNA"
179            ],
180            "file_set_type": "experimental data",
181            "lab": {
182                "title": "Ryan Corces, Gladstone Institute UCSF"
183            },
184            "preferred_assay_title": "10x multiome",
185            "status": "preview",
186            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
187        },
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192                "igvf:corces_measurementSet_X024_G7_ATAC"
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195            "lab": {
196                "title": "Ryan Corces, Gladstone Institute UCSF"
197            },
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199            "status": "preview",
200            "summary": "single-nucleus ATAC-seq (10x multiome)"
201        },
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206                "igvf:corces_measurementSet_X024_G7_RNA"
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211            },
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214            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
215        },
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220                "igvf:corces_measurementSet_X024_G3_ATAC"
221            ],
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223            "lab": {
224                "title": "Ryan Corces, Gladstone Institute UCSF"
225            },
226            "preferred_assay_title": "10x multiome",
227            "status": "preview",
228            "summary": "single-nucleus ATAC-seq (10x multiome)"
229        },
230        {
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232            "accession": "IGVFDS6602VADR",
233            "aliases": [
234                "igvf:corces_measurementSet_X024_G3_RNA"
235            ],
236            "file_set_type": "experimental data",
237            "lab": {
238                "title": "Ryan Corces, Gladstone Institute UCSF"
239            },
240            "preferred_assay_title": "10x multiome",
241            "status": "preview",
242            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
243        },
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248                "igvf:corces_measurementSet_X024_G5_ATAC"
249            ],
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251            "lab": {
252                "title": "Ryan Corces, Gladstone Institute UCSF"
253            },
254            "preferred_assay_title": "10x multiome",
255            "status": "preview",
256            "summary": "single-nucleus ATAC-seq (10x multiome)"
257        },
258        {
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260            "accession": "IGVFDS6012ICRP",
261            "aliases": [
262                "igvf:corces_measurementSet_X024_G5_RNA"
263            ],
264            "file_set_type": "experimental data",
265            "lab": {
266                "title": "Ryan Corces, Gladstone Institute UCSF"
267            },
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269            "status": "preview",
270            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
271        },
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280                "title": "Ryan Corces, Gladstone Institute UCSF"
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283            "status": "preview",
284            "summary": "single-nucleus ATAC-seq (10x multiome)"
285        },
286        {
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294                "title": "Ryan Corces, Gladstone Institute UCSF"
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298            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
299        },
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307            "lab": {
308                "title": "Ryan Corces, Gladstone Institute UCSF"
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310            "preferred_assay_title": "10x multiome",
311            "status": "preview",
312            "summary": "single-nucleus ATAC-seq (10x multiome)"
313        },
314        {
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317            "aliases": [
318                "igvf:corces_measurementSet_RP008_G6_RNA"
319            ],
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321            "lab": {
322                "title": "Ryan Corces, Gladstone Institute UCSF"
323            },
324            "preferred_assay_title": "10x multiome",
325            "status": "preview",
326            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
327        },
328        {
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332                "igvf:corces_measurementSet_RP008_G1_ATAC"
333            ],
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335            "lab": {
336                "title": "Ryan Corces, Gladstone Institute UCSF"
337            },
338            "preferred_assay_title": "10x multiome",
339            "status": "preview",
340            "summary": "single-nucleus ATAC-seq (10x multiome)"
341        },
342        {
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345            "aliases": [
346                "igvf:corces_measurementSet_RP008_G1_RNA"
347            ],
348            "file_set_type": "experimental data",
349            "lab": {
350                "title": "Ryan Corces, Gladstone Institute UCSF"
351            },
352            "preferred_assay_title": "10x multiome",
353            "status": "preview",
354            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
355        },
356        {
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360                "igvf:corces_measurementSet_RP008_G3_ATAC"
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363            "lab": {
364                "title": "Ryan Corces, Gladstone Institute UCSF"
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367            "status": "preview",
368            "summary": "single-nucleus ATAC-seq (10x multiome)"
369        },
370        {
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375            ],
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378                "title": "Ryan Corces, Gladstone Institute UCSF"
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382            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
383        },
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392                "title": "Ryan Corces, Gladstone Institute UCSF"
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395            "status": "preview",
396            "summary": "single-nucleus ATAC-seq (10x multiome)"
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398        {
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406                "title": "Ryan Corces, Gladstone Institute UCSF"
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410            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
411        },
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420                "title": "Ryan Corces, Gladstone Institute UCSF"
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424            "summary": "single-nucleus ATAC-seq (10x multiome)"
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434                "title": "Ryan Corces, Gladstone Institute UCSF"
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438            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
439        },
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480            "summary": "single-nucleus ATAC-seq (10x multiome)"
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494            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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508            "summary": "single-nucleus ATAC-seq (10x multiome)"
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521            "status": "preview",
522            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
523        }
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525    "institutional_certificates": [
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535        "title": "Ryan Corces, Gladstone Institute UCSF"
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614        },
615        {
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619        }
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621    "origin_of": [],
622    "parts": [],
623    "pmi": 240,
624    "pmi_units": "minute",
625    "pooled_in": [],
626    "preservation_method": "flash-freezing",
627    "protocols": [
628        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
629    ],
630    "sample_terms": [
631        {
632            "@id": "/sample-terms/UBERON_0002129/",
633            "status": "preview",
634            "term_name": "cerebellar cortex"
635        }
636    ],
637    "schema_version": "21",
638    "sex": "male",
639    "sorted_fractions": [],
640    "sources": [
641        {
642            "@id": "/sources/banner-health/",
643            "status": "released",
644            "title": "Banner Health"
645        }
646    ],
647    "status": "preview",
648    "submitted_by": {
649        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
650        "title": "Ryan Corces"
651    },
652    "summary": "Homo sapiens (male, 81 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy",
653    "taxa": "Homo sapiens",
654    "upper_bound_age": 81,
655    "upper_bound_age_in_hours": 709560,
656    "uuid": "7340e8f2-c802-4fb5-852a-63d91ed3ddf6",
657    "virtual": false
658}