{
"@context": "/terms/",
"@id": "/tissues/IGVFSM8176TJID/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8176TJID",
"age": "90 or above",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN1329_MTG"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM8176TJID](/tissues/IGVFSM8176TJID/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM8176TJID/"
},
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM8176TJID](/tissues/IGVFSM8176TJID/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM8176TJID/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM8176TJID](/tissues/IGVFSM8176TJID/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM8176TJID/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T04:13:45.707223+00:00",
"date_obtained": "2023-02-15",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO6335EDSP/",
"accession": "IGVFDO6335EDSP",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS4687NIDM/",
"accession": "IGVFDS4687NIDM",
"aliases": [
"igvf:corces_measurementSet_X038_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6332PVTL/",
"accession": "IGVFDS6332PVTL",
"aliases": [
"igvf:corces_measurementSet_X038_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2753IVGH/",
"accession": "IGVFDS2753IVGH",
"aliases": [
"igvf:corces_measurementSet_X038_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5070YLLC/",
"accession": "IGVFDS5070YLLC",
"aliases": [
"igvf:corces_measurementSet_X038_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9140MDGR/",
"accession": "IGVFDS9140MDGR",
"aliases": [
"igvf:corces_measurementSet_X038_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7496XKTN/",
"accession": "IGVFDS7496XKTN",
"aliases": [
"igvf:corces_measurementSet_X038_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5965OBYQ/",
"accession": "IGVFDS5965OBYQ",
"aliases": [
"igvf:corces_measurementSet_X038_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9793XAEK/",
"accession": "IGVFDS9793XAEK",
"aliases": [
"igvf:corces_measurementSet_X038_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5515JWQG/",
"accession": "IGVFDS5515JWQG",
"aliases": [
"igvf:corces_measurementSet_X038_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3689JVVJ/",
"accession": "IGVFDS3689JVVJ",
"aliases": [
"igvf:corces_measurementSet_X038_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4084LQYP/",
"accession": "IGVFDS4084LQYP",
"aliases": [
"igvf:corces_measurementSet_X038_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8196BIHW/",
"accession": "IGVFDS8196BIHW",
"aliases": [
"igvf:corces_measurementSet_X038_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5459UKQP/",
"accession": "IGVFDS5459UKQP",
"aliases": [
"igvf:corces_measurementSet_X038_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5295OUVQ/",
"accession": "IGVFDS5295OUVQ",
"aliases": [
"igvf:corces_measurementSet_X038_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5655FKDO/",
"accession": "IGVFDS5655FKDO",
"aliases": [
"igvf:corces_measurementSet_X038_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4112KBND/",
"accession": "IGVFDS4112KBND",
"aliases": [
"igvf:corces_measurementSet_X038_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8528XJMX/",
"accession": "IGVFDS8528XJMX",
"aliases": [
"igvf:corces_measurementSet_RP018_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8319TUBW/",
"accession": "IGVFDS8319TUBW",
"aliases": [
"igvf:corces_measurementSet_RP018_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1869XCPD/",
"accession": "IGVFDS1869XCPD",
"aliases": [
"igvf:corces_measurementSet_RP018_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3371UYOY/",
"accession": "IGVFDS3371UYOY",
"aliases": [
"igvf:corces_measurementSet_RP018_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8112LERP/",
"accession": "IGVFDS8112LERP",
"aliases": [
"igvf:corces_measurementSet_RP018_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7572ZDYQ/",
"accession": "IGVFDS7572ZDYQ",
"aliases": [
"igvf:corces_measurementSet_RP018_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2873YXDP/",
"accession": "IGVFDS2873YXDP",
"aliases": [
"igvf:corces_measurementSet_RP018_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9355RKER/",
"accession": "IGVFDS9355RKER",
"aliases": [
"igvf:corces_measurementSet_RP018_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3423DTHY/",
"accession": "IGVFDS3423DTHY",
"aliases": [
"igvf:corces_measurementSet_RP018_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8678BJVO/",
"accession": "IGVFDS8678BJVO",
"aliases": [
"igvf:corces_measurementSet_RP018_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4938ZDAY/",
"accession": "IGVFDS4938ZDAY",
"aliases": [
"igvf:corces_measurementSet_RP018_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2371MSDM/",
"accession": "IGVFDS2371MSDM",
"aliases": [
"igvf:corces_measurementSet_RP018_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 90,
"lower_bound_age_in_hours": 788400,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM1975ZGXC/",
"accession": "IGVFSM1975ZGXC",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0937HBMF/",
"accession": "IGVFSM0937HBMF",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9167BOAS/",
"accession": "IGVFSM9167BOAS",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2284JNTB/",
"accession": "IGVFSM2284JNTB",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8997BRSW/",
"accession": "IGVFSM8997BRSW",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6450TAPI/",
"accession": "IGVFSM6450TAPI",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4050UUIC/",
"accession": "IGVFSM4050UUIC",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3087OOJP/",
"accession": "IGVFSM3087OOJP",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3143GHVU/",
"accession": "IGVFSM3143GHVU",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9675WPZF/",
"accession": "IGVFSM9675WPZF",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1416OTQT/",
"accession": "IGVFSM1416OTQT",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0275PBUR/",
"accession": "IGVFSM0275PBUR",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7137MKTX/",
"accession": "IGVFSM7137MKTX",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4716JFLW/",
"accession": "IGVFSM4716JFLW",
"status": "preview"
}
],
"origin_of": [],
"parts": [],
"pmi": 135,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 90 or above years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy",
"taxa": "Homo sapiens",
"upper_bound_age": 90,
"upper_bound_age_in_hours": 788400,
"uuid": "1ac0ed8c-a088-4ec5-a414-1549d0f355d3",
"virtual": false
}