substantia nigra — IGVFSM8153DQZM

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Summary

Homo sapiens (male, 83 years) substantia nigra tissue associated with Parkinson's disease

Sample Terms

substantia nigra

Sex

male

Age

83 years

Post-mortem Interval

180 minutes

Preservation Method

flash-freezing

Taxa

Homo sapiens

Sources

Date Harvested

February 1, 2023

Aliases

igvf:corces_tissue_BANN1317_SN

Protocols

https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Donors

1 item

Accession

Aliases

Sex

Taxa

igvf:corces_donor_BANN1317

male

Homo sapiens

File Sets

48 items

single-nucleus RNA sequencing assay (10x multiome)

igvf:corces_measurementSet_RP012_G4_RNA

Ryan Corces, Gladstone Institute UCSF

single-nucleus ATAC-seq (10x multiome)

igvf:corces_measurementSet_RP026_G1_ATAC

Ryan Corces, Gladstone Institute UCSF

single-nucleus RNA sequencing assay (10x multiome)

igvf:corces_measurementSet_RP026_G1_RNA

Ryan Corces, Gladstone Institute UCSF

single-nucleus ATAC-seq (10x multiome)

igvf:corces_measurementSet_RP012_G2_ATAC

Ryan Corces, Gladstone Institute UCSF

single-nucleus RNA sequencing assay (10x multiome)

igvf:corces_measurementSet_X033_G1_RNA

Ryan Corces, Gladstone Institute UCSF

single-nucleus ATAC-seq (10x multiome)

igvf:corces_measurementSet_X033_G5_ATAC

Ryan Corces, Gladstone Institute UCSF

single-nucleus RNA sequencing assay (10x multiome)

igvf:corces_measurementSet_X033_G2_RNA

Ryan Corces, Gladstone Institute UCSF

single-nucleus ATAC-seq (10x multiome)

igvf:corces_measurementSet_X033_G4_ATAC

Ryan Corces, Gladstone Institute UCSF

single-nucleus RNA sequencing assay (10x multiome)

igvf:corces_measurementSet_RP012_G2_RNA

Ryan Corces, Gladstone Institute UCSF

single-nucleus ATAC-seq (10x multiome)

igvf:corces_measurementSet_RP012_G8_ATAC

Ryan Corces, Gladstone Institute UCSF

Multiplexed In Samples

24 items

Sample Terms

Disease Terms

Summary

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue; ... and 10 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue; ... and 10 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue; ... and 10 more samples

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples