{
"@context": "/terms/",
"@id": "/tissues/IGVFSM8064YTVF/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8064YTVF",
"age": "78",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN1030_SN"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM8064YTVF](/tissues/IGVFSM8064YTVF/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM8064YTVF/"
},
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM8064YTVF](/tissues/IGVFSM8064YTVF/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM8064YTVF/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM8064YTVF](/tissues/IGVFSM8064YTVF/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM8064YTVF/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T04:08:58.836694+00:00",
"date_obtained": "2022-11-01",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO0802OVOD/",
"accession": "IGVFDO0802OVOD",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS2090MMXQ/",
"accession": "IGVFDS2090MMXQ",
"aliases": [
"igvf:corces_measurementSet_X012_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8320CHSM/",
"accession": "IGVFDS8320CHSM",
"aliases": [
"igvf:corces_measurementSet_X012_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3028DRCS/",
"accession": "IGVFDS3028DRCS",
"aliases": [
"igvf:corces_measurementSet_X012_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8618FETC/",
"accession": "IGVFDS8618FETC",
"aliases": [
"igvf:corces_measurementSet_X012_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6097MLNW/",
"accession": "IGVFDS6097MLNW",
"aliases": [
"igvf:corces_measurementSet_X012_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8623RZCR/",
"accession": "IGVFDS8623RZCR",
"aliases": [
"igvf:corces_measurementSet_X012_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1853NUVR/",
"accession": "IGVFDS1853NUVR",
"aliases": [
"igvf:corces_measurementSet_X012_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4522DBCU/",
"accession": "IGVFDS4522DBCU",
"aliases": [
"igvf:corces_measurementSet_X012_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4668FOTU/",
"accession": "IGVFDS4668FOTU",
"aliases": [
"igvf:corces_measurementSet_X012_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9442NJMF/",
"accession": "IGVFDS9442NJMF",
"aliases": [
"igvf:corces_measurementSet_X012_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0173RFIN/",
"accession": "IGVFDS0173RFIN",
"aliases": [
"igvf:corces_measurementSet_X012_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0198YHSP/",
"accession": "IGVFDS0198YHSP",
"aliases": [
"igvf:corces_measurementSet_X012_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3832WNZH/",
"accession": "IGVFDS3832WNZH",
"aliases": [
"igvf:corces_measurementSet_X012_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2146EWJJ/",
"accession": "IGVFDS2146EWJJ",
"aliases": [
"igvf:corces_measurementSet_X012_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6345DAXP/",
"accession": "IGVFDS6345DAXP",
"aliases": [
"igvf:corces_measurementSet_X012_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7422MPAN/",
"accession": "IGVFDS7422MPAN",
"aliases": [
"igvf:corces_measurementSet_X012_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7591HPZZ/",
"accession": "IGVFDS7591HPZZ",
"aliases": [
"igvf:corces_measurementSet_RP003_G11_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3094GPXN/",
"accession": "IGVFDS3094GPXN",
"aliases": [
"igvf:corces_measurementSet_RP003_G11_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2649LUVJ/",
"accession": "IGVFDS2649LUVJ",
"aliases": [
"igvf:corces_measurementSet_RP003_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8121RXJO/",
"accession": "IGVFDS8121RXJO",
"aliases": [
"igvf:corces_measurementSet_RP003_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3500WEWQ/",
"accession": "IGVFDS3500WEWQ",
"aliases": [
"igvf:corces_measurementSet_RP003_G10_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4160BSWK/",
"accession": "IGVFDS4160BSWK",
"aliases": [
"igvf:corces_measurementSet_RP003_G10_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4142KOUC/",
"accession": "IGVFDS4142KOUC",
"aliases": [
"igvf:corces_measurementSet_RP003_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1845DDRG/",
"accession": "IGVFDS1845DDRG",
"aliases": [
"igvf:corces_measurementSet_RP003_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3290ZBHS/",
"accession": "IGVFDS3290ZBHS",
"aliases": [
"igvf:corces_measurementSet_RP003_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0832RLNW/",
"accession": "IGVFDS0832RLNW",
"aliases": [
"igvf:corces_measurementSet_RP003_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6536JZLW/",
"accession": "IGVFDS6536JZLW",
"aliases": [
"igvf:corces_measurementSet_RP003_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8200AYHW/",
"accession": "IGVFDS8200AYHW",
"aliases": [
"igvf:corces_measurementSet_RP003_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3115SXPF/",
"accession": "IGVFDS3115SXPF",
"aliases": [
"igvf:corces_measurementSet_RP003_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9117EHMG/",
"accession": "IGVFDS9117EHMG",
"aliases": [
"igvf:corces_measurementSet_RP003_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0476RPPF/",
"accession": "IGVFDS0476RPPF",
"aliases": [
"igvf:corces_measurementSet_RP003_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5810GJMK/",
"accession": "IGVFDS5810GJMK",
"aliases": [
"igvf:corces_measurementSet_RP003_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6758XUNF/",
"accession": "IGVFDS6758XUNF",
"aliases": [
"igvf:corces_measurementSet_RP003_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0767WGIJ/",
"accession": "IGVFDS0767WGIJ",
"aliases": [
"igvf:corces_measurementSet_RP003_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9896NOPL/",
"accession": "IGVFDS9896NOPL",
"aliases": [
"igvf:corces_measurementSet_RP003_G9_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0572YOVC/",
"accession": "IGVFDS0572YOVC",
"aliases": [
"igvf:corces_measurementSet_RP003_G9_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7931RONP/",
"accession": "IGVFDS7931RONP",
"aliases": [
"igvf:corces_measurementSet_RP003_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1215JKPP/",
"accession": "IGVFDS1215JKPP",
"aliases": [
"igvf:corces_measurementSet_RP003_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 78,
"lower_bound_age_in_hours": 683280,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM7828IXBW/",
"accession": "IGVFSM7828IXBW",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0906OTCP/",
"accession": "IGVFSM0906OTCP",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7268MVFI/",
"accession": "IGVFSM7268MVFI",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4418HKGN/",
"accession": "IGVFSM4418HKGN",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3364ZVVD/",
"accession": "IGVFSM3364ZVVD",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9021MNYU/",
"accession": "IGVFSM9021MNYU",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4152BKDQ/",
"accession": "IGVFSM4152BKDQ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9165ZREW/",
"accession": "IGVFSM9165ZREW",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3041DZHH/",
"accession": "IGVFSM3041DZHH",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9787UROU/",
"accession": "IGVFSM9787UROU",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9300FBPH/",
"accession": "IGVFSM9300FBPH",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6503EIGD/",
"accession": "IGVFSM6503EIGD",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8908NMRB/",
"accession": "IGVFSM8908NMRB",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1185QWRL/",
"accession": "IGVFSM1185QWRL",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4281HPKU/",
"accession": "IGVFSM4281HPKU",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1534PPUU/",
"accession": "IGVFSM1534PPUU",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2159KBCQ/",
"accession": "IGVFSM2159KBCQ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9317XZBG/",
"accession": "IGVFSM9317XZBG",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0965JCVG/",
"accession": "IGVFSM0965JCVG",
"status": "preview"
}
],
"origin_of": [],
"parts": [],
"pmi": 190,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002038/",
"status": "preview",
"term_name": "substantia nigra"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 78 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy",
"taxa": "Homo sapiens",
"upper_bound_age": 78,
"upper_bound_age_in_hours": 683280,
"uuid": "0b838427-90b3-4af2-9320-981b3cb1ed45",
"virtual": false
}