posterior cingulate gyrus — IGVFSM7406LGVW

preview
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM7406LGVW/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM7406LGVW",
11    "age": "83",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1317_CING"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM7406LGVW](/tissues/IGVFSM7406LGVW/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM7406LGVW/"
25            },
26            {
27                "category": "missing CCF ID",
28                "detail": "Tissue [IGVFSM7406LGVW](/tissues/IGVFSM7406LGVW/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_tissue_ccf_id",
32                "path": "/tissues/IGVFSM7406LGVW/"
33            }
34        ]
35    },
36    "award": {
37        "@id": "/awards/HG012076/",
38        "component": "mapping"
39    },
40    "classifications": [
41        "tissue"
42    ],
43    "creation_timestamp": "2025-03-19T04:11:31.493199+00:00",
44    "date_obtained": "2023-01-09",
45    "disease_terms": [
46        {
47            "@id": "/phenotype-terms/DOID_14330/",
48            "status": "in progress",
49            "term_name": "Parkinson's disease"
50        }
51    ],
52    "donors": [
53        {
54            "@id": "/human-donors/IGVFDO4053HEKW/",
55            "accession": "IGVFDO4053HEKW",
56            "ethnicities": [
57                "European"
58            ],
59            "status": "preview"
60        }
61    ],
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68            ],
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70            "lab": {
71                "title": "Ryan Corces, Gladstone Institute UCSF"
72            },
73            "preferred_assay_title": "10x multiome",
74            "status": "preview",
75            "summary": "single-nucleus ATAC-seq (10x multiome)"
76        },
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82            ],
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85                "title": "Ryan Corces, Gladstone Institute UCSF"
86            },
87            "preferred_assay_title": "10x multiome",
88            "status": "preview",
89            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
90        },
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99                "title": "Ryan Corces, Gladstone Institute UCSF"
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101            "preferred_assay_title": "10x multiome",
102            "status": "preview",
103            "summary": "single-nucleus ATAC-seq (10x multiome)"
104        },
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113                "title": "Ryan Corces, Gladstone Institute UCSF"
114            },
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116            "status": "preview",
117            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
118        },
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124            ],
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126            "lab": {
127                "title": "Ryan Corces, Gladstone Institute UCSF"
128            },
129            "preferred_assay_title": "10x multiome",
130            "status": "preview",
131            "summary": "single-nucleus ATAC-seq (10x multiome)"
132        },
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138            ],
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140            "lab": {
141                "title": "Ryan Corces, Gladstone Institute UCSF"
142            },
143            "preferred_assay_title": "10x multiome",
144            "status": "preview",
145            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
146        },
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152            ],
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155                "title": "Ryan Corces, Gladstone Institute UCSF"
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159            "summary": "single-nucleus ATAC-seq (10x multiome)"
160        },
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166            ],
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168            "lab": {
169                "title": "Ryan Corces, Gladstone Institute UCSF"
170            },
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172            "status": "preview",
173            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
174        },
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179                "igvf:corces_measurementSet_X027_G5_ATAC"
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182            "lab": {
183                "title": "Ryan Corces, Gladstone Institute UCSF"
184            },
185            "preferred_assay_title": "10x multiome",
186            "status": "preview",
187            "summary": "single-nucleus ATAC-seq (10x multiome)"
188        },
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197                "title": "Ryan Corces, Gladstone Institute UCSF"
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201            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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207                "igvf:corces_measurementSet_X027_G4_ATAC"
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211                "title": "Ryan Corces, Gladstone Institute UCSF"
212            },
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215            "summary": "single-nucleus ATAC-seq (10x multiome)"
216        },
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221                "igvf:corces_measurementSet_X027_G4_RNA"
222            ],
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224            "lab": {
225                "title": "Ryan Corces, Gladstone Institute UCSF"
226            },
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228            "status": "preview",
229            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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238            "lab": {
239                "title": "Ryan Corces, Gladstone Institute UCSF"
240            },
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242            "status": "preview",
243            "summary": "single-nucleus ATAC-seq (10x multiome)"
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250            ],
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252            "lab": {
253                "title": "Ryan Corces, Gladstone Institute UCSF"
254            },
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256            "status": "preview",
257            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
258        },
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266            "lab": {
267                "title": "Ryan Corces, Gladstone Institute UCSF"
268            },
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271            "summary": "single-nucleus ATAC-seq (10x multiome)"
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281                "title": "Ryan Corces, Gladstone Institute UCSF"
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285            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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295                "title": "Ryan Corces, Gladstone Institute UCSF"
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299            "summary": "single-nucleus ATAC-seq (10x multiome)"
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309                "title": "Ryan Corces, Gladstone Institute UCSF"
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313            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
314        },
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323                "title": "Ryan Corces, Gladstone Institute UCSF"
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326            "status": "preview",
327            "summary": "single-nucleus ATAC-seq (10x multiome)"
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336            "lab": {
337                "title": "Ryan Corces, Gladstone Institute UCSF"
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340            "status": "preview",
341            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
342        },
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350            "lab": {
351                "title": "Ryan Corces, Gladstone Institute UCSF"
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354            "status": "preview",
355            "summary": "single-nucleus ATAC-seq (10x multiome)"
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365                "title": "Ryan Corces, Gladstone Institute UCSF"
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368            "status": "preview",
369            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
370        },
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379                "title": "Ryan Corces, Gladstone Institute UCSF"
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382            "status": "preview",
383            "summary": "single-nucleus ATAC-seq (10x multiome)"
384        },
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392            "lab": {
393                "title": "Ryan Corces, Gladstone Institute UCSF"
394            },
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396            "status": "preview",
397            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
398        }
399    ],
400    "institutional_certificates": [
401        {
402            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
403            "certificate_identifier": "IP115-05",
404            "controlled_access": false,
405            "status": "in progress"
406        }
407    ],
408    "lab": {
409        "@id": "/labs/ryan-corces/",
410        "title": "Ryan Corces, Gladstone Institute UCSF"
411    },
412    "lower_bound_age": 83,
413    "lower_bound_age_in_hours": 727080,
414    "multiplexed_in": [
415        {
416            "@id": "/multiplexed-samples/IGVFSM0241SZCM/",
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433            "status": "preview"
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437            "accession": "IGVFSM8693AIJI",
438            "status": "preview"
439        },
440        {
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443            "status": "preview"
444        },
445        {
446            "@id": "/multiplexed-samples/IGVFSM3694DWTC/",
447            "accession": "IGVFSM3694DWTC",
448            "status": "preview"
449        },
450        {
451            "@id": "/multiplexed-samples/IGVFSM2801FMBF/",
452            "accession": "IGVFSM2801FMBF",
453            "status": "preview"
454        },
455        {
456            "@id": "/multiplexed-samples/IGVFSM7245NHUU/",
457            "accession": "IGVFSM7245NHUU",
458            "status": "preview"
459        },
460        {
461            "@id": "/multiplexed-samples/IGVFSM9011XOSL/",
462            "accession": "IGVFSM9011XOSL",
463            "status": "preview"
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465        {
466            "@id": "/multiplexed-samples/IGVFSM9612VWVL/",
467            "accession": "IGVFSM9612VWVL",
468            "status": "preview"
469        },
470        {
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472            "accession": "IGVFSM2478QXUD",
473            "status": "preview"
474        }
475    ],
476    "origin_of": [],
477    "parts": [],
478    "pmi": 180,
479    "pmi_units": "minute",
480    "pooled_in": [],
481    "preservation_method": "flash-freezing",
482    "protocols": [
483        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
484    ],
485    "sample_terms": [
486        {
487            "@id": "/sample-terms/UBERON_0002740/",
488            "status": "preview",
489            "term_name": "posterior cingulate gyrus"
490        }
491    ],
492    "schema_version": "21",
493    "sex": "male",
494    "sorted_fractions": [],
495    "sources": [
496        {
497            "@id": "/sources/banner-health/",
498            "status": "released",
499            "title": "Banner Health"
500        }
501    ],
502    "status": "preview",
503    "submitted_by": {
504        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
505        "title": "Ryan Corces"
506    },
507    "summary": "Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease",
508    "taxa": "Homo sapiens",
509    "upper_bound_age": 83,
510    "upper_bound_age_in_hours": 727080,
511    "uuid": "fb2d17cf-a9a9-41c1-9378-448bb8806d77",
512    "virtual": false
513}