{
"@context": "/terms/",
"@id": "/tissues/IGVFSM7309QDQX/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7309QDQX",
"age": "72",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN2003_MTG"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM7309QDQX](/tissues/IGVFSM7309QDQX/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM7309QDQX/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM7309QDQX](/tissues/IGVFSM7309QDQX/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM7309QDQX/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T04:12:33.509996+00:00",
"date_obtained": "2023-02-01",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO9462VNBA/",
"accession": "IGVFDO9462VNBA",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS2132XMHB/",
"accession": "IGVFDS2132XMHB",
"aliases": [
"igvf:corces_measurementSet_X032_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3071WPNU/",
"accession": "IGVFDS3071WPNU",
"aliases": [
"igvf:corces_measurementSet_X032_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2336BWET/",
"accession": "IGVFDS2336BWET",
"aliases": [
"igvf:corces_measurementSet_X032_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7019JXXD/",
"accession": "IGVFDS7019JXXD",
"aliases": [
"igvf:corces_measurementSet_X032_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3080TIMY/",
"accession": "IGVFDS3080TIMY",
"aliases": [
"igvf:corces_measurementSet_X032_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3535IMWQ/",
"accession": "IGVFDS3535IMWQ",
"aliases": [
"igvf:corces_measurementSet_X032_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4088CJJR/",
"accession": "IGVFDS4088CJJR",
"aliases": [
"igvf:corces_measurementSet_X032_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7706LHLI/",
"accession": "IGVFDS7706LHLI",
"aliases": [
"igvf:corces_measurementSet_X032_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7833BTPG/",
"accession": "IGVFDS7833BTPG",
"aliases": [
"igvf:corces_measurementSet_X032_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9057KJEI/",
"accession": "IGVFDS9057KJEI",
"aliases": [
"igvf:corces_measurementSet_X032_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6899OQTS/",
"accession": "IGVFDS6899OQTS",
"aliases": [
"igvf:corces_measurementSet_X032_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0346MQLV/",
"accession": "IGVFDS0346MQLV",
"aliases": [
"igvf:corces_measurementSet_X032_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5776BDPL/",
"accession": "IGVFDS5776BDPL",
"aliases": [
"igvf:corces_measurementSet_X032_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6220QSDQ/",
"accession": "IGVFDS6220QSDQ",
"aliases": [
"igvf:corces_measurementSet_X032_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2723SVTT/",
"accession": "IGVFDS2723SVTT",
"aliases": [
"igvf:corces_measurementSet_X032_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5452ZVED/",
"accession": "IGVFDS5452ZVED",
"aliases": [
"igvf:corces_measurementSet_X032_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0911QBRM/",
"accession": "IGVFDS0911QBRM",
"aliases": [
"igvf:corces_measurementSet_RP024_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6965XCFR/",
"accession": "IGVFDS6965XCFR",
"aliases": [
"igvf:corces_measurementSet_RP024_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2903IZSU/",
"accession": "IGVFDS2903IZSU",
"aliases": [
"igvf:corces_measurementSet_RP024_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7104BYEI/",
"accession": "IGVFDS7104BYEI",
"aliases": [
"igvf:corces_measurementSet_RP024_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6834GIYR/",
"accession": "IGVFDS6834GIYR",
"aliases": [
"igvf:corces_measurementSet_RP024_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8079TJID/",
"accession": "IGVFDS8079TJID",
"aliases": [
"igvf:corces_measurementSet_RP024_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7629BTQC/",
"accession": "IGVFDS7629BTQC",
"aliases": [
"igvf:corces_measurementSet_RP024_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6835ATJK/",
"accession": "IGVFDS6835ATJK",
"aliases": [
"igvf:corces_measurementSet_RP024_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 72,
"lower_bound_age_in_hours": 630720,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM5595EQCW/",
"accession": "IGVFSM5595EQCW",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8574LYFF/",
"accession": "IGVFSM8574LYFF",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6835GLQE/",
"accession": "IGVFSM6835GLQE",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2646IJIB/",
"accession": "IGVFSM2646IJIB",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7956ZXDL/",
"accession": "IGVFSM7956ZXDL",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8298WTCX/",
"accession": "IGVFSM8298WTCX",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8487OHPZ/",
"accession": "IGVFSM8487OHPZ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8028VLKJ/",
"accession": "IGVFSM8028VLKJ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3515JFEY/",
"accession": "IGVFSM3515JFEY",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2596KVVR/",
"accession": "IGVFSM2596KVVR",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2219CEMB/",
"accession": "IGVFSM2219CEMB",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4734YTAT/",
"accession": "IGVFSM4734YTAT",
"status": "preview"
}
],
"origin_of": [],
"parts": [],
"pmi": 159,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with Parkinson's disease",
"taxa": "Homo sapiens",
"upper_bound_age": 72,
"upper_bound_age_in_hours": 630720,
"uuid": "ea45ae1b-c23d-4b77-b0b0-0bc95fb5430a",
"virtual": false
}