substantia nigra — IGVFSM7192OHQL

preview

This object is in preview status. Metadata is subject to change until this object is released.

Summary

Homo sapiens (male, 78 years) substantia nigra tissue associated with Parkinson's disease

Sample Terms

substantia nigra

Sex

male

Age

78 years

Post-mortem Interval

250 minutes

Preservation Method

flash-freezing

Taxa

Homo sapiens

Sources

Date Harvested

March 16, 2023

Aliases

igvf:corces_tissue_BANN2103_SN

Protocols

https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw

Donors

1 item

Accession

Aliases

Sex

Taxa

igvf:corces_donor_BANN2103

male

Homo sapiens

File Sets

24 items

single-nucleus RNA sequencing assay (10x multiome)

igvf:corces_measurementSet_X046_G8_RNA

Ryan Corces, Gladstone Institute UCSF

single-nucleus RNA sequencing assay (10x multiome)

igvf:corces_measurementSet_X046_G2_RNA

Ryan Corces, Gladstone Institute UCSF

single-nucleus ATAC-seq (10x multiome)

igvf:corces_measurementSet_RP024_G2_ATAC

Ryan Corces, Gladstone Institute UCSF

single-nucleus ATAC-seq (10x multiome)

igvf:corces_measurementSet_RP024_G1_ATAC

Ryan Corces, Gladstone Institute UCSF

single-nucleus ATAC-seq (10x multiome)

igvf:corces_measurementSet_X046_G3_ATAC

Ryan Corces, Gladstone Institute UCSF

single-nucleus ATAC-seq (10x multiome)

igvf:corces_measurementSet_X046_G6_ATAC

Ryan Corces, Gladstone Institute UCSF

single-nucleus RNA sequencing assay (10x multiome)

igvf:corces_measurementSet_X046_G5_RNA

Ryan Corces, Gladstone Institute UCSF

single-nucleus ATAC-seq (10x multiome)

igvf:corces_measurementSet_X046_G1_ATAC

Ryan Corces, Gladstone Institute UCSF

single-nucleus RNA sequencing assay (10x multiome)

igvf:corces_measurementSet_X046_G4_RNA

Ryan Corces, Gladstone Institute UCSF

single-nucleus RNA sequencing assay (10x multiome)

igvf:corces_measurementSet_X046_G3_RNA

Ryan Corces, Gladstone Institute UCSF

Multiplexed In Samples

12 items

Sample Terms

Disease Terms

Summary

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples

Attribution

Award

Principal Investigator(s)

Ansuman Satpathy

Contact P.I.

Ansuman Satpathy

Lab

Ryan Corces, Gladstone Institute UCSF