left cerebral cortex — IGVFSM6969SYOD

released
1{
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4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
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11    "age": "72",
12    "age_units": "day",
13    "aliases": [
14        "ali-mortazavi:105_CASTJ_10M_21_NTR_0000646"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "NTR term ID",
20                "detail": "Sample term for [NTR_0000646](/sample-terms/NTR_0000646/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_ntr_term_id",
24                "path": "/sample-terms/NTR_0000646/"
25            },
26            {
27                "category": "missing publication",
28                "detail": "Tissue [IGVFSM6969SYOD](/tissues/IGVFSM6969SYOD/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_sample_missing_publication",
32                "path": "/tissues/IGVFSM6969SYOD/"
33            }
34        ]
35    },
36    "award": {
37        "@id": "/awards/HG012077/",
38        "component": "mapping"
39    },
40    "classifications": [
41        "tissue"
42    ],
43    "creation_timestamp": "2023-08-25T17:24:24.721037+00:00",
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49            "strain": "CAST/EiJ"
50        }
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61                "title": "Ali Mortazavi, UCI"
62            },
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64            "status": "released",
65            "summary": "Parse SPLiT-seq"
66        },
67        {
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72                "title": "Ali Mortazavi, UCI"
73            },
74            "status": "released",
75            "summary": "Mus musculus barcodes"
76        },
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105                "title": "Ali Mortazavi, UCI"
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108            "summary": "Parse SPLiT-seq"
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118                "title": "Ali Mortazavi, UCI"
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121            "summary": "Parse SPLiT-seq"
122        },
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131                "title": "Ali Mortazavi, UCI"
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134            "summary": "Parse SPLiT-seq: sparse gene count matrix"
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144                "title": "Ali Mortazavi, UCI"
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171                "title": "Ali Mortazavi, UCI"
172            },
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174            "summary": "Parse SPLiT-seq: sparse gene count matrix"
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180            "lab": {
181                "title": "Ali Mortazavi, UCI"
182            },
183            "status": "in progress",
184            "summary": "Parse SPLiT-seq"
185        },
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194                "title": "Ali Mortazavi, UCI"
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197            "summary": "Parse SPLiT-seq"
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206            "lab": {
207                "title": "Ali Mortazavi, UCI"
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211            "summary": "Parse SPLiT-seq"
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218            ],
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221                "title": "Ali Mortazavi, UCI"
222            },
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224            "summary": "Parse SPLiT-seq: sparse gene count matrix"
225        },
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229            "file_set_type": "intermediate analysis",
230            "lab": {
231                "title": "Ali Mortazavi, UCI"
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233            "status": "in progress",
234            "summary": "Parse SPLiT-seq"
235        },
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240                "ali-mortazavi:B01_13C_illumina_scpipeline_counts"
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242            "file_set_type": "intermediate analysis",
243            "lab": {
244                "title": "Ali Mortazavi, UCI"
245            },
246            "status": "in progress",
247            "summary": "Parse SPLiT-seq"
248        },
249        {
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256            "lab": {
257                "title": "Ali Mortazavi, UCI"
258            },
259            "preferred_assay_title": "Parse SPLiT-seq",
260            "status": "released",
261            "summary": "Parse SPLiT-seq"
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269            "file_set_type": "intermediate analysis",
270            "lab": {
271                "title": "Ali Mortazavi, UCI"
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273            "status": "released",
274            "summary": "Parse SPLiT-seq: sparse gene count matrix"
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281                "title": "Ali Mortazavi, UCI"
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283            "status": "in progress",
284            "summary": "Parse SPLiT-seq"
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294                "title": "Ali Mortazavi, UCI"
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297            "summary": "Parse SPLiT-seq"
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306            "lab": {
307                "title": "Ali Mortazavi, UCI"
308            },
309            "preferred_assay_title": "Parse SPLiT-seq",
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311            "summary": "Parse SPLiT-seq"
312        },
313        {
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315            "accession": "IGVFDS3636WTST",
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318            ],
319            "file_set_type": "intermediate analysis",
320            "lab": {
321                "title": "Ali Mortazavi, UCI"
322            },
323            "status": "released",
324            "summary": "Parse SPLiT-seq: sparse gene count matrix"
325        },
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329            "file_set_type": "intermediate analysis",
330            "lab": {
331                "title": "Ali Mortazavi, UCI"
332            },
333            "status": "in progress",
334            "summary": "Parse SPLiT-seq"
335        },
336        {
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341            ],
342            "file_set_type": "intermediate analysis",
343            "lab": {
344                "title": "Ali Mortazavi, UCI"
345            },
346            "status": "in progress",
347            "summary": "Parse SPLiT-seq"
348        },
349        {
350            "@id": "/measurement-sets/IGVFDS9522BMQK/",
351            "accession": "IGVFDS9522BMQK",
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357                "title": "Ali Mortazavi, UCI"
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359            "preferred_assay_title": "Parse SPLiT-seq",
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361            "summary": "Parse SPLiT-seq"
362        },
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371                "title": "Ali Mortazavi, UCI"
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373            "preferred_assay_title": "Parse SPLiT-seq",
374            "status": "released",
375            "summary": "Parse SPLiT-seq"
376        },
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384            "lab": {
385                "title": "Ali Mortazavi, UCI"
386            },
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388            "summary": "Parse SPLiT-seq: sparse gene count matrix"
389        },
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395                "title": "Ali Mortazavi, UCI"
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408                "title": "Ali Mortazavi, UCI"
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411            "summary": "Parse SPLiT-seq: sparse gene count matrix"
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421                "title": "Ali Mortazavi, UCI"
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424            "summary": "Parse SPLiT-seq: sparse gene count matrix"
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434                "title": "Ali Mortazavi, UCI"
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437            "summary": "Parse SPLiT-seq: sparse gene count matrix"
438        },
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447                "title": "Ali Mortazavi, UCI"
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450            "summary": "Parse SPLiT-seq: transcript quantifications"
451        },
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460                "title": "Ali Mortazavi, UCI"
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463            "summary": "Parse SPLiT-seq: transcript quantifications"
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473                "title": "Ali Mortazavi, UCI"
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476            "summary": "Parse SPLiT-seq"
477        },
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486                "title": "Ali Mortazavi, UCI"
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489            "summary": "Parse SPLiT-seq: sparse gene count matrix"
490        },
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497            "file_set_type": "principal analysis",
498            "lab": {
499                "title": "Ali Mortazavi, UCI"
500            },
501            "status": "in progress",
502            "summary": "Parse SPLiT-seq: sparse gene count matrix"
503        },
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510            "file_set_type": "principal analysis",
511            "lab": {
512                "title": "Ali Mortazavi, UCI"
513            },
514            "status": "in progress",
515            "summary": "Parse SPLiT-seq: transcript quantifications"
516        },
517        {
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524            "lab": {
525                "title": "Ali Mortazavi, UCI"
526            },
527            "status": "in progress",
528            "summary": "Parse SPLiT-seq: transcript quantifications"
529        },
530        {
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537            "lab": {
538                "title": "Ali Mortazavi, UCI"
539            },
540            "status": "in progress",
541            "summary": "Parse SPLiT-seq: sparse gene count matrix"
542        },
543        {
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550            "lab": {
551                "title": "Ali Mortazavi, UCI"
552            },
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555            "summary": "Parse SPLiT-seq"
556        },
557        {
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559            "accession": "IGVFDS2762DTQI",
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563            "file_set_type": "intermediate analysis",
564            "lab": {
565                "title": "Ali Mortazavi, UCI"
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568            "summary": "Parse SPLiT-seq: sparse gene count matrix"
569        },
570        {
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573            "file_set_type": "intermediate analysis",
574            "lab": {
575                "title": "Ali Mortazavi, UCI"
576            },
577            "status": "in progress",
578            "summary": "Parse SPLiT-seq"
579        },
580        {
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586            "file_set_type": "intermediate analysis",
587            "lab": {
588                "title": "Ali Mortazavi, UCI"
589            },
590            "status": "in progress",
591            "summary": "Parse SPLiT-seq"
592        },
593        {
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601                "title": "Ali Mortazavi, UCI"
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603            "preferred_assay_title": "Parse SPLiT-seq",
604            "status": "released",
605            "summary": "Parse SPLiT-seq"
606        },
607        {
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615                "title": "Ali Mortazavi, UCI"
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620        },
621        {
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627            "file_set_type": "intermediate analysis",
628            "lab": {
629                "title": "Ali Mortazavi, UCI"
630            },
631            "status": "released",
632            "summary": "Parse SPLiT-seq: sparse gene count matrix"
633        },
634        {
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638            "lab": {
639                "title": "Ali Mortazavi, UCI"
640            },
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642            "summary": "Parse SPLiT-seq"
643        },
644        {
645            "@id": "/analysis-sets/IGVFDS0231GDWH/",
646            "accession": "IGVFDS0231GDWH",
647            "aliases": [
648                "ali-mortazavi:b01_next1_13H_bulk_k31_casteij"
649            ],
650            "file_set_type": "principal analysis",
651            "lab": {
652                "title": "Ali Mortazavi, UCI"
653            },
654            "status": "in progress",
655            "summary": "Parse SPLiT-seq: transcript quantifications"
656        },
657        {
658            "@id": "/analysis-sets/IGVFDS1622ABWA/",
659            "accession": "IGVFDS1622ABWA",
660            "aliases": [
661                "ali-mortazavi:b01_next1_13H_bulk_k31_mm39"
662            ],
663            "file_set_type": "principal analysis",
664            "lab": {
665                "title": "Ali Mortazavi, UCI"
666            },
667            "status": "in progress",
668            "summary": "Parse SPLiT-seq: transcript quantifications"
669        },
670        {
671            "@id": "/analysis-sets/IGVFDS5946BBUS/",
672            "accession": "IGVFDS5946BBUS",
673            "aliases": [
674                "ali-mortazavi:B01_13H_illumina_scpipeline_counts"
675            ],
676            "file_set_type": "intermediate analysis",
677            "lab": {
678                "title": "Ali Mortazavi, UCI"
679            },
680            "status": "in progress",
681            "summary": "Parse SPLiT-seq"
682        },
683        {
684            "@id": "/analysis-sets/IGVFDS3833XYEY/",
685            "accession": "IGVFDS3833XYEY",
686            "aliases": [
687                "ali-mortazavi:b01_nanopore_13H_bulk_k63_casteij"
688            ],
689            "file_set_type": "principal analysis",
690            "lab": {
691                "title": "Ali Mortazavi, UCI"
692            },
693            "status": "in progress",
694            "summary": "Parse SPLiT-seq: transcript quantifications"
695        },
696        {
697            "@id": "/analysis-sets/IGVFDS5673HQEN/",
698            "accession": "IGVFDS5673HQEN",
699            "aliases": [
700                "ali-mortazavi:b01_nanopore_13H_bulk_k63_mm39"
701            ],
702            "file_set_type": "principal analysis",
703            "lab": {
704                "title": "Ali Mortazavi, UCI"
705            },
706            "status": "in progress",
707            "summary": "Parse SPLiT-seq: transcript quantifications"
708        }
709    ],
710    "institutional_certificates": [],
711    "lab": {
712        "@id": "/labs/ali-mortazavi/",
713        "title": "Ali Mortazavi, UCI"
714    },
715    "lower_bound_age": 72,
716    "lower_bound_age_in_hours": 1728,
717    "multiplexed_in": [
718        {
719            "@id": "/multiplexed-samples/IGVFSM1676SYRC/",
720            "accession": "IGVFSM1676SYRC",
721            "status": "released"
722        },
723        {
724            "@id": "/multiplexed-samples/IGVFSM1955RVUC/",
725            "accession": "IGVFSM1955RVUC",
726            "status": "released"
727        },
728        {
729            "@id": "/multiplexed-samples/IGVFSM8093RPKR/",
730            "accession": "IGVFSM8093RPKR",
731            "status": "released"
732        },
733        {
734            "@id": "/multiplexed-samples/IGVFSM9603DIDI/",
735            "accession": "IGVFSM9603DIDI",
736            "status": "released"
737        },
738        {
739            "@id": "/multiplexed-samples/IGVFSM6546CQJB/",
740            "accession": "IGVFSM6546CQJB",
741            "status": "released"
742        },
743        {
744            "@id": "/multiplexed-samples/IGVFSM8722YQAW/",
745            "accession": "IGVFSM8722YQAW",
746            "status": "released"
747        },
748        {
749            "@id": "/multiplexed-samples/IGVFSM6958ESMJ/",
750            "accession": "IGVFSM6958ESMJ",
751            "status": "released"
752        },
753        {
754            "@id": "/multiplexed-samples/IGVFSM2294BOOU/",
755            "accession": "IGVFSM2294BOOU",
756            "status": "released"
757        }
758    ],
759    "origin_of": [],
760    "parts": [],
761    "pooled_in": [],
762    "release_timestamp": "2024-06-11T17:07:00.534097+00:00",
763    "sample_terms": [
764        {
765            "@id": "/sample-terms/NTR_0000646/",
766            "status": "released",
767            "term_name": "left cerebral cortex"
768        }
769    ],
770    "schema_version": "21",
771    "sex": "male",
772    "sorted_fractions": [],
773    "sources": [
774        {
775            "@id": "/sources/jackson-labs/",
776            "status": "released",
777            "title": "The Jackson Laboratory"
778        }
779    ],
780    "status": "released",
781    "submitted_by": {
782        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
783        "title": "Diane Trout"
784    },
785    "summary": "Mus musculus CAST/EiJ (male, 72 days) left cerebral cortex tissue",
786    "taxa": "Mus musculus",
787    "upper_bound_age": 72,
788    "upper_bound_age_in_hours": 1728,
789    "uuid": "21fbdda9-f0a4-4f4c-b303-46b6d6766b4c",
790    "virtual": false
791}