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substantia nigra — IGVFSM6887IEIW
substantia nigra — IGVFSM6887IEIW
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Summary
Homo sapiens (male, 80 years) substantia nigra tissue
Sample Terms
substantia nigra
Sex
male
Age
80 years
Post-mortem Interval
195 minutes
Preservation Method
flash-freezing
Taxa
Homo sapiens
Sources
banner-health
Date Harvested
February 1, 2023
Aliases
igvf:corces_tissue_BANN0315_SN
Protocols
https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO8584FBOT
igvf:corces_donor_BANN0315
male
Homo sapiens
File Sets
24 items
1
2
3
Accession
Summary
Aliases
Lab
IGVFDS0346MQLV
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X032_G2_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS1252CYKZ
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP019_G1_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS1580SPZO
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP019_G4_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS2132XMHB
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_X032_G4_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS2336BWET
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_X032_G8_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS2695JODN
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP019_G3_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS2723SVTT
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_X032_G6_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS3071WPNU
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X032_G4_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS3080TIMY
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_X032_G1_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS3535IMWQ
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X032_G1_RNA
Ryan Corces, Gladstone Institute UCSF
Multiplexed In Samples
12 items
1
2
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM0238UJFH
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
IGVFSM0718CVKW
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
IGVFSM2646IJIB
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
IGVFSM3886NYMH
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
IGVFSM4069BQTG
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
IGVFSM5595EQCW
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
IGVFSM6835GLQE
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
IGVFSM7956ZXDL
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
IGVFSM8028VLKJ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
IGVFSM8298WTCX
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF