{
"@context": "/terms/",
"@id": "/tissues/IGVFSM6844DNNZ/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6844DNNZ",
"age": "unknown",
"aliases": [
"buenrostro-bernstein:surya-APC01-A1-7B,APC01-B1-4B,APC01-A1-11B,APC01-A1-13B,APC01-B1-6B"
],
"audit": {
"WARNING": [
{
"category": "missing age",
"detail": "Tissue [IGVFSM6844DNNZ](/tissues/IGVFSM6844DNNZ/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
"level_name": "WARNING",
"name": "audit_biosample_age",
"path": "/tissues/IGVFSM6844DNNZ/"
}
]
},
"award": {
"@id": "/awards/HG011986/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-02-07T02:05:35.337841+00:00",
"donors": [
{
"@id": "/rodent-donors/IGVFDO6621DZIL/",
"accession": "IGVFDO6621DZIL",
"status": "preview",
"strain": "C57BL/6J"
},
{
"@id": "/rodent-donors/IGVFDO1366PENC/",
"accession": "IGVFDO1366PENC",
"status": "preview",
"strain": "C57BL/6J"
},
{
"@id": "/rodent-donors/IGVFDO7909DHIA/",
"accession": "IGVFDO7909DHIA",
"status": "preview",
"strain": "C57BL/6J"
},
{
"@id": "/rodent-donors/IGVFDO8555YQES/",
"accession": "IGVFDO8555YQES",
"status": "preview",
"strain": "C57BL/6J"
},
{
"@id": "/rodent-donors/IGVFDO0418WVMT/",
"accession": "IGVFDO0418WVMT",
"status": "preview",
"strain": "C57BL/6J"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS4128FOHH/",
"accession": "IGVFDS4128FOHH",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set26"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "preview",
"summary": "single-cell ATAC-seq (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS3977RUCK/",
"accession": "IGVFDS3977RUCK",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set29"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "preview",
"summary": "single-cell RNA sequencing assay (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS5523WWKM/",
"accession": "IGVFDS5523WWKM",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set28"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "preview",
"summary": "single-cell RNA sequencing assay (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS6123LRGF/",
"accession": "IGVFDS6123LRGF",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set25"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "preview",
"summary": "single-cell ATAC-seq (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS9209XACN/",
"accession": "IGVFDS9209XACN",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set27"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "preview",
"summary": "single-cell ATAC-seq (SHARE-seq)"
},
{
"@id": "/analysis-sets/IGVFDS5153IDEO/",
"accession": "IGVFDS5153IDEO",
"aliases": [
"buenrostro-bernstein:surya-mouse-colitis-tissue-analysis-set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"status": "in progress",
"summary": "SHARE-seq: fragments, sparse gene count matrix"
}
],
"institutional_certificates": [],
"lab": {
"@id": "/labs/jason-buenrostro/",
"title": "Jason Buenrostro, Broad"
},
"multiplexed_in": [],
"origin_of": [],
"parts": [],
"pooled_in": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001155/",
"status": "released",
"term_name": "colon"
}
],
"schema_version": "21",
"sex": "unspecified",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/jackson-labs/",
"status": "released",
"title": "The Jackson Laboratory"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"summary": "colon tissue, Mus musculus C57BL/6J",
"taxa": "Mus musculus",
"uuid": "68600374-5b2a-46ae-b5fa-59fe4882141f",
"virtual": false
}