{
"@context": "/terms/",
"@id": "/tissues/IGVFSM6809PNLH/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6809PNLH",
"age": "57",
"age_units": "year",
"aliases": [
"ansuman-satpathy:quertermous_LAD_artery_donor1"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Tissue [IGVFSM6809PNLH](/tissues/IGVFSM6809PNLH/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/tissues/IGVFSM6809PNLH/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM6809PNLH](/tissues/IGVFSM6809PNLH/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM6809PNLH/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2024-07-23T20:34:27.818590+00:00",
"disease_terms": [
{
"@id": "/phenotype-terms/MONDO_0005010/",
"status": "released",
"term_name": "coronary artery disorder"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO2120EMSK/",
"accession": "IGVFDO2120EMSK",
"ethnicities": [
"European"
],
"status": "released"
}
],
"file_sets": [
{
"@id": "/auxiliary-sets/IGVFDS7173XOSJ/",
"accession": "IGVFDS7173XOSJ",
"aliases": [
"ansuman-satpathy:multiseq_igvf13_10x4"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS2114XGWE/",
"accession": "IGVFDS2114XGWE",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf13_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS5059CAEA/",
"accession": "IGVFDS5059CAEA",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf13_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS4694DHAU/",
"accession": "IGVFDS4694DHAU",
"aliases": [
"ansuman-satpathy:igvf13_analysis_set_10x4"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/measurement-sets/IGVFDS0681XTSI/",
"accession": "IGVFDS0681XTSI",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf13_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS9737EJUL/",
"accession": "IGVFDS9737EJUL",
"aliases": [
"ansuman-satpathy:multiseq_igvf13_10x3"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS8107GLLI/",
"accession": "IGVFDS8107GLLI",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf13_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS5970TALX/",
"accession": "IGVFDS5970TALX",
"aliases": [
"ansuman-satpathy:igvf13_analysis_set_10x3"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/measurement-sets/IGVFDS3842BVTL/",
"accession": "IGVFDS3842BVTL",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf13_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS1681DUIN/",
"accession": "IGVFDS1681DUIN",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf13_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS1833OZIZ/",
"accession": "IGVFDS1833OZIZ",
"aliases": [
"ansuman-satpathy:multiseq_igvf13_10x1"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS5901DVUG/",
"accession": "IGVFDS5901DVUG",
"aliases": [
"ansuman-satpathy:igvf13_analysis_set",
"ansuman-satpathy:igvf13_analysis_set_10x1"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/auxiliary-sets/IGVFDS2143LCWD/",
"accession": "IGVFDS2143LCWD",
"aliases": [
"ansuman-satpathy:multiseq_igvf13_10x2"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS8398CKNT/",
"accession": "IGVFDS8398CKNT",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf13_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS4493CHDR/",
"accession": "IGVFDS4493CHDR",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf13_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS0226SGHL/",
"accession": "IGVFDS0226SGHL",
"aliases": [
"ansuman-satpathy:igvf13_analysis_set_10x2"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/1779b95c-3032-475b-8d7a-c607a2e42d32/",
"certificate_identifier": "IP115-09",
"controlled_access": true,
"data_use_limitation": "GRU",
"data_use_limitation_modifiers": [
"PUB"
],
"status": "released"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"lower_bound_age": 57,
"lower_bound_age_in_hours": 499320,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM4220ALCU/",
"accession": "IGVFSM4220ALCU",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM1606SNOP/",
"accession": "IGVFSM1606SNOP",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM6422YWWA/",
"accession": "IGVFSM6422YWWA",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM7106DAZZ/",
"accession": "IGVFSM7106DAZZ",
"status": "released"
}
],
"origin_of": [],
"parts": [],
"pooled_in": [],
"release_timestamp": "2025-03-22T00:40:13.691525+00:00",
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001626/",
"status": "released",
"term_name": "left coronary artery"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/thomas-quertermous/",
"status": "current",
"title": "Thomas Quertermous, Stanford"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "Homo sapiens (male, 57 years) left coronary artery tissue associated with coronary artery disorder",
"taxa": "Homo sapiens",
"upper_bound_age": 57,
"upper_bound_age_in_hours": 499320,
"uuid": "5d9ba8d0-41c8-4904-bc66-d472406dd719",
"virtual": false
}