posterior cingulate gyrus — IGVFSM6732THUF

preview
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM6732THUF/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM6732THUF",
11    "age": "80",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN0129_CING"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM6732THUF](/tissues/IGVFSM6732THUF/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM6732THUF/"
25            },
26            {
27                "category": "mismatched status",
28                "detail": "Preview tissue [IGVFSM6732THUF](/tissues/IGVFSM6732THUF/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_item_status",
32                "path": "/tissues/IGVFSM6732THUF/"
33            },
34            {
35                "category": "missing CCF ID",
36                "detail": "Tissue [IGVFSM6732THUF](/tissues/IGVFSM6732THUF/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
37                "level": 30,
38                "level_name": "INTERNAL_ACTION",
39                "name": "audit_tissue_ccf_id",
40                "path": "/tissues/IGVFSM6732THUF/"
41            }
42        ]
43    },
44    "award": {
45        "@id": "/awards/HG012076/",
46        "component": "mapping"
47    },
48    "classifications": [
49        "tissue"
50    ],
51    "creation_timestamp": "2025-03-19T04:15:57.714157+00:00",
52    "date_obtained": "2023-04-25",
53    "disease_terms": [
54        {
55            "@id": "/phenotype-terms/MONDO_0004975/",
56            "status": "released",
57            "term_name": "Alzheimer disease"
58        },
59        {
60            "@id": "/phenotype-terms/DOID_14330/",
61            "status": "in progress",
62            "term_name": "Parkinson's disease"
63        },
64        {
65            "@id": "/phenotype-terms/DOID_9246/",
66            "status": "in progress",
67            "term_name": "cerebral amyloid angiopathy"
68        }
69    ],
70    "donors": [
71        {
72            "@id": "/human-donors/IGVFDO4191KJBR/",
73            "accession": "IGVFDO4191KJBR",
74            "ethnicities": [
75                "European"
76            ],
77            "status": "preview"
78        }
79    ],
80    "file_sets": [
81        {
82            "@id": "/measurement-sets/IGVFDS3205MIGH/",
83            "accession": "IGVFDS3205MIGH",
84            "aliases": [
85                "igvf:corces_measurementSet_RP002_G1_ATAC"
86            ],
87            "file_set_type": "experimental data",
88            "lab": {
89                "title": "Ryan Corces, Gladstone Institute UCSF"
90            },
91            "preferred_assay_title": "10x multiome",
92            "status": "preview",
93            "summary": "single-nucleus ATAC-seq (10x multiome)"
94        },
95        {
96            "@id": "/measurement-sets/IGVFDS3912RWNQ/",
97            "accession": "IGVFDS3912RWNQ",
98            "aliases": [
99                "igvf:corces_measurementSet_RP002_G1_RNA"
100            ],
101            "file_set_type": "experimental data",
102            "lab": {
103                "title": "Ryan Corces, Gladstone Institute UCSF"
104            },
105            "preferred_assay_title": "10x multiome",
106            "status": "preview",
107            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
108        },
109        {
110            "@id": "/measurement-sets/IGVFDS1915XQPY/",
111            "accession": "IGVFDS1915XQPY",
112            "aliases": [
113                "igvf:corces_measurementSet_RP002_G2_ATAC"
114            ],
115            "file_set_type": "experimental data",
116            "lab": {
117                "title": "Ryan Corces, Gladstone Institute UCSF"
118            },
119            "preferred_assay_title": "10x multiome",
120            "status": "preview",
121            "summary": "single-nucleus ATAC-seq (10x multiome)"
122        },
123        {
124            "@id": "/measurement-sets/IGVFDS7046AXFV/",
125            "accession": "IGVFDS7046AXFV",
126            "aliases": [
127                "igvf:corces_measurementSet_RP002_G2_RNA"
128            ],
129            "file_set_type": "experimental data",
130            "lab": {
131                "title": "Ryan Corces, Gladstone Institute UCSF"
132            },
133            "preferred_assay_title": "10x multiome",
134            "status": "preview",
135            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
136        },
137        {
138            "@id": "/measurement-sets/IGVFDS3248CAFJ/",
139            "accession": "IGVFDS3248CAFJ",
140            "aliases": [
141                "igvf:corces_measurementSet_RP002_G3_ATAC"
142            ],
143            "file_set_type": "experimental data",
144            "lab": {
145                "title": "Ryan Corces, Gladstone Institute UCSF"
146            },
147            "preferred_assay_title": "10x multiome",
148            "status": "preview",
149            "summary": "single-nucleus ATAC-seq (10x multiome)"
150        },
151        {
152            "@id": "/measurement-sets/IGVFDS1304MSEA/",
153            "accession": "IGVFDS1304MSEA",
154            "aliases": [
155                "igvf:corces_measurementSet_RP002_G3_RNA"
156            ],
157            "file_set_type": "experimental data",
158            "lab": {
159                "title": "Ryan Corces, Gladstone Institute UCSF"
160            },
161            "preferred_assay_title": "10x multiome",
162            "status": "preview",
163            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
164        },
165        {
166            "@id": "/measurement-sets/IGVFDS9516JWYR/",
167            "accession": "IGVFDS9516JWYR",
168            "aliases": [
169                "igvf:corces_measurementSet_RP002_G5_ATAC"
170            ],
171            "file_set_type": "experimental data",
172            "lab": {
173                "title": "Ryan Corces, Gladstone Institute UCSF"
174            },
175            "preferred_assay_title": "10x multiome",
176            "status": "preview",
177            "summary": "single-nucleus ATAC-seq (10x multiome)"
178        },
179        {
180            "@id": "/measurement-sets/IGVFDS1921IDBT/",
181            "accession": "IGVFDS1921IDBT",
182            "aliases": [
183                "igvf:corces_measurementSet_RP002_G5_RNA"
184            ],
185            "file_set_type": "experimental data",
186            "lab": {
187                "title": "Ryan Corces, Gladstone Institute UCSF"
188            },
189            "preferred_assay_title": "10x multiome",
190            "status": "preview",
191            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
192        },
193        {
194            "@id": "/measurement-sets/IGVFDS9083ZGEJ/",
195            "accession": "IGVFDS9083ZGEJ",
196            "aliases": [
197                "igvf:corces_measurementSet_RP002_G7_ATAC"
198            ],
199            "file_set_type": "experimental data",
200            "lab": {
201                "title": "Ryan Corces, Gladstone Institute UCSF"
202            },
203            "preferred_assay_title": "10x multiome",
204            "status": "preview",
205            "summary": "single-nucleus ATAC-seq (10x multiome)"
206        },
207        {
208            "@id": "/measurement-sets/IGVFDS5273QVEC/",
209            "accession": "IGVFDS5273QVEC",
210            "aliases": [
211                "igvf:corces_measurementSet_RP002_G7_RNA"
212            ],
213            "file_set_type": "experimental data",
214            "lab": {
215                "title": "Ryan Corces, Gladstone Institute UCSF"
216            },
217            "preferred_assay_title": "10x multiome",
218            "status": "preview",
219            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
220        },
221        {
222            "@id": "/measurement-sets/IGVFDS2890YOZM/",
223            "accession": "IGVFDS2890YOZM",
224            "aliases": [
225                "igvf:corces_measurementSet_RP002_G8_ATAC"
226            ],
227            "file_set_type": "experimental data",
228            "lab": {
229                "title": "Ryan Corces, Gladstone Institute UCSF"
230            },
231            "preferred_assay_title": "10x multiome",
232            "status": "preview",
233            "summary": "single-nucleus ATAC-seq (10x multiome)"
234        },
235        {
236            "@id": "/measurement-sets/IGVFDS1302XQWQ/",
237            "accession": "IGVFDS1302XQWQ",
238            "aliases": [
239                "igvf:corces_measurementSet_RP002_G8_RNA"
240            ],
241            "file_set_type": "experimental data",
242            "lab": {
243                "title": "Ryan Corces, Gladstone Institute UCSF"
244            },
245            "preferred_assay_title": "10x multiome",
246            "status": "preview",
247            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
248        },
249        {
250            "@id": "/measurement-sets/IGVFDS6812JLHX/",
251            "accession": "IGVFDS6812JLHX",
252            "aliases": [
253                "igvf:corces_measurementSet_RP002_G4_ATAC"
254            ],
255            "file_set_type": "experimental data",
256            "lab": {
257                "title": "Ryan Corces, Gladstone Institute UCSF"
258            },
259            "preferred_assay_title": "10x multiome",
260            "status": "preview",
261            "summary": "single-nucleus ATAC-seq (10x multiome)"
262        },
263        {
264            "@id": "/measurement-sets/IGVFDS0147IIPP/",
265            "accession": "IGVFDS0147IIPP",
266            "aliases": [
267                "igvf:corces_measurementSet_RP002_G4_RNA"
268            ],
269            "file_set_type": "experimental data",
270            "lab": {
271                "title": "Ryan Corces, Gladstone Institute UCSF"
272            },
273            "preferred_assay_title": "10x multiome",
274            "status": "preview",
275            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
276        },
277        {
278            "@id": "/measurement-sets/IGVFDS2314IHVG/",
279            "accession": "IGVFDS2314IHVG",
280            "aliases": [
281                "igvf:corces_measurementSet_RP002_G6_ATAC"
282            ],
283            "file_set_type": "experimental data",
284            "lab": {
285                "title": "Ryan Corces, Gladstone Institute UCSF"
286            },
287            "preferred_assay_title": "10x multiome",
288            "status": "preview",
289            "summary": "single-nucleus ATAC-seq (10x multiome)"
290        },
291        {
292            "@id": "/measurement-sets/IGVFDS1494LZKD/",
293            "accession": "IGVFDS1494LZKD",
294            "aliases": [
295                "igvf:corces_measurementSet_RP002_G6_RNA"
296            ],
297            "file_set_type": "experimental data",
298            "lab": {
299                "title": "Ryan Corces, Gladstone Institute UCSF"
300            },
301            "preferred_assay_title": "10x multiome",
302            "status": "preview",
303            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
304        },
305        {
306            "@id": "/measurement-sets/IGVFDS7128RFFJ/",
307            "accession": "IGVFDS7128RFFJ",
308            "aliases": [
309                "igvf:corces_measurementSet_RP025_G1_ATAC"
310            ],
311            "file_set_type": "experimental data",
312            "lab": {
313                "title": "Ryan Corces, Gladstone Institute UCSF"
314            },
315            "preferred_assay_title": "10x multiome",
316            "status": "preview",
317            "summary": "single-nucleus ATAC-seq (10x multiome)"
318        },
319        {
320            "@id": "/measurement-sets/IGVFDS2832XQIH/",
321            "accession": "IGVFDS2832XQIH",
322            "aliases": [
323                "igvf:corces_measurementSet_RP025_G1_RNA"
324            ],
325            "file_set_type": "experimental data",
326            "lab": {
327                "title": "Ryan Corces, Gladstone Institute UCSF"
328            },
329            "preferred_assay_title": "10x multiome",
330            "status": "preview",
331            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
332        },
333        {
334            "@id": "/measurement-sets/IGVFDS5090MUJO/",
335            "accession": "IGVFDS5090MUJO",
336            "aliases": [
337                "igvf:corces_measurementSet_RP025_G3_ATAC"
338            ],
339            "file_set_type": "experimental data",
340            "lab": {
341                "title": "Ryan Corces, Gladstone Institute UCSF"
342            },
343            "preferred_assay_title": "10x multiome",
344            "status": "preview",
345            "summary": "single-nucleus ATAC-seq (10x multiome)"
346        },
347        {
348            "@id": "/measurement-sets/IGVFDS5353IQJE/",
349            "accession": "IGVFDS5353IQJE",
350            "aliases": [
351                "igvf:corces_measurementSet_RP025_G3_RNA"
352            ],
353            "file_set_type": "experimental data",
354            "lab": {
355                "title": "Ryan Corces, Gladstone Institute UCSF"
356            },
357            "preferred_assay_title": "10x multiome",
358            "status": "preview",
359            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
360        },
361        {
362            "@id": "/measurement-sets/IGVFDS1273KOYU/",
363            "accession": "IGVFDS1273KOYU",
364            "aliases": [
365                "igvf:corces_measurementSet_RP025_G2_ATAC"
366            ],
367            "file_set_type": "experimental data",
368            "lab": {
369                "title": "Ryan Corces, Gladstone Institute UCSF"
370            },
371            "preferred_assay_title": "10x multiome",
372            "status": "preview",
373            "summary": "single-nucleus ATAC-seq (10x multiome)"
374        },
375        {
376            "@id": "/measurement-sets/IGVFDS6420MGXZ/",
377            "accession": "IGVFDS6420MGXZ",
378            "aliases": [
379                "igvf:corces_measurementSet_RP025_G2_RNA"
380            ],
381            "file_set_type": "experimental data",
382            "lab": {
383                "title": "Ryan Corces, Gladstone Institute UCSF"
384            },
385            "preferred_assay_title": "10x multiome",
386            "status": "preview",
387            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
388        },
389        {
390            "@id": "/measurement-sets/IGVFDS0986EJTQ/",
391            "accession": "IGVFDS0986EJTQ",
392            "aliases": [
393                "igvf:corces_measurementSet_RP025_G5_ATAC"
394            ],
395            "file_set_type": "experimental data",
396            "lab": {
397                "title": "Ryan Corces, Gladstone Institute UCSF"
398            },
399            "preferred_assay_title": "10x multiome",
400            "status": "preview",
401            "summary": "single-nucleus ATAC-seq (10x multiome)"
402        },
403        {
404            "@id": "/measurement-sets/IGVFDS1887NZWO/",
405            "accession": "IGVFDS1887NZWO",
406            "aliases": [
407                "igvf:corces_measurementSet_RP025_G5_RNA"
408            ],
409            "file_set_type": "experimental data",
410            "lab": {
411                "title": "Ryan Corces, Gladstone Institute UCSF"
412            },
413            "preferred_assay_title": "10x multiome",
414            "status": "preview",
415            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
416        },
417        {
418            "@id": "/measurement-sets/IGVFDS2883YYPV/",
419            "accession": "IGVFDS2883YYPV",
420            "aliases": [
421                "igvf:corces_measurementSet_RP025_G6_ATAC"
422            ],
423            "file_set_type": "experimental data",
424            "lab": {
425                "title": "Ryan Corces, Gladstone Institute UCSF"
426            },
427            "preferred_assay_title": "10x multiome",
428            "status": "preview",
429            "summary": "single-nucleus ATAC-seq (10x multiome)"
430        },
431        {
432            "@id": "/measurement-sets/IGVFDS9042EIOS/",
433            "accession": "IGVFDS9042EIOS",
434            "aliases": [
435                "igvf:corces_measurementSet_RP025_G6_RNA"
436            ],
437            "file_set_type": "experimental data",
438            "lab": {
439                "title": "Ryan Corces, Gladstone Institute UCSF"
440            },
441            "preferred_assay_title": "10x multiome",
442            "status": "preview",
443            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
444        },
445        {
446            "@id": "/measurement-sets/IGVFDS7965KZXZ/",
447            "accession": "IGVFDS7965KZXZ",
448            "aliases": [
449                "igvf:corces_measurementSet_RP025_G8_ATAC"
450            ],
451            "file_set_type": "experimental data",
452            "lab": {
453                "title": "Ryan Corces, Gladstone Institute UCSF"
454            },
455            "preferred_assay_title": "10x multiome",
456            "status": "preview",
457            "summary": "single-nucleus ATAC-seq (10x multiome)"
458        },
459        {
460            "@id": "/measurement-sets/IGVFDS6467CIOG/",
461            "accession": "IGVFDS6467CIOG",
462            "aliases": [
463                "igvf:corces_measurementSet_RP025_G8_RNA"
464            ],
465            "file_set_type": "experimental data",
466            "lab": {
467                "title": "Ryan Corces, Gladstone Institute UCSF"
468            },
469            "preferred_assay_title": "10x multiome",
470            "status": "preview",
471            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
472        },
473        {
474            "@id": "/measurement-sets/IGVFDS5424OKKO/",
475            "accession": "IGVFDS5424OKKO",
476            "aliases": [
477                "igvf:corces_measurementSet_RP025_G7_ATAC"
478            ],
479            "file_set_type": "experimental data",
480            "lab": {
481                "title": "Ryan Corces, Gladstone Institute UCSF"
482            },
483            "preferred_assay_title": "10x multiome",
484            "status": "preview",
485            "summary": "single-nucleus ATAC-seq (10x multiome)"
486        },
487        {
488            "@id": "/measurement-sets/IGVFDS5137LMUM/",
489            "accession": "IGVFDS5137LMUM",
490            "aliases": [
491                "igvf:corces_measurementSet_RP025_G7_RNA"
492            ],
493            "file_set_type": "experimental data",
494            "lab": {
495                "title": "Ryan Corces, Gladstone Institute UCSF"
496            },
497            "preferred_assay_title": "10x multiome",
498            "status": "preview",
499            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
500        },
501        {
502            "@id": "/measurement-sets/IGVFDS5320BHIT/",
503            "accession": "IGVFDS5320BHIT",
504            "aliases": [
505                "igvf:corces_measurementSet_RP025_G4_ATAC"
506            ],
507            "file_set_type": "experimental data",
508            "lab": {
509                "title": "Ryan Corces, Gladstone Institute UCSF"
510            },
511            "preferred_assay_title": "10x multiome",
512            "status": "preview",
513            "summary": "single-nucleus ATAC-seq (10x multiome)"
514        },
515        {
516            "@id": "/measurement-sets/IGVFDS2310NNOV/",
517            "accession": "IGVFDS2310NNOV",
518            "aliases": [
519                "igvf:corces_measurementSet_RP025_G4_RNA"
520            ],
521            "file_set_type": "experimental data",
522            "lab": {
523                "title": "Ryan Corces, Gladstone Institute UCSF"
524            },
525            "preferred_assay_title": "10x multiome",
526            "status": "preview",
527            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
528        }
529    ],
530    "institutional_certificates": [
531        {
532            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
533            "certificate_identifier": "IP115-05",
534            "controlled_access": false,
535            "status": "in progress"
536        }
537    ],
538    "lab": {
539        "@id": "/labs/ryan-corces/",
540        "title": "Ryan Corces, Gladstone Institute UCSF"
541    },
542    "lower_bound_age": 80,
543    "lower_bound_age_in_hours": 700800,
544    "multiplexed_in": [
545        {
546            "@id": "/multiplexed-samples/IGVFSM2125NOYE/",
547            "accession": "IGVFSM2125NOYE",
548            "status": "preview"
549        },
550        {
551            "@id": "/multiplexed-samples/IGVFSM2903AXLJ/",
552            "accession": "IGVFSM2903AXLJ",
553            "status": "preview"
554        },
555        {
556            "@id": "/multiplexed-samples/IGVFSM6307OPWX/",
557            "accession": "IGVFSM6307OPWX",
558            "status": "preview"
559        },
560        {
561            "@id": "/multiplexed-samples/IGVFSM5494QQKW/",
562            "accession": "IGVFSM5494QQKW",
563            "status": "preview"
564        },
565        {
566            "@id": "/multiplexed-samples/IGVFSM2339RJIS/",
567            "accession": "IGVFSM2339RJIS",
568            "status": "preview"
569        },
570        {
571            "@id": "/multiplexed-samples/IGVFSM7029TFEQ/",
572            "accession": "IGVFSM7029TFEQ",
573            "status": "preview"
574        },
575        {
576            "@id": "/multiplexed-samples/IGVFSM6197WJXN/",
577            "accession": "IGVFSM6197WJXN",
578            "status": "preview"
579        },
580        {
581            "@id": "/multiplexed-samples/IGVFSM9681MUTW/",
582            "accession": "IGVFSM9681MUTW",
583            "status": "preview"
584        },
585        {
586            "@id": "/multiplexed-samples/IGVFSM7939CAGT/",
587            "accession": "IGVFSM7939CAGT",
588            "status": "preview"
589        },
590        {
591            "@id": "/multiplexed-samples/IGVFSM4296CDRL/",
592            "accession": "IGVFSM4296CDRL",
593            "status": "preview"
594        },
595        {
596            "@id": "/multiplexed-samples/IGVFSM0036UTPF/",
597            "accession": "IGVFSM0036UTPF",
598            "status": "preview"
599        },
600        {
601            "@id": "/multiplexed-samples/IGVFSM4968PVUL/",
602            "accession": "IGVFSM4968PVUL",
603            "status": "preview"
604        },
605        {
606            "@id": "/multiplexed-samples/IGVFSM9856IYBQ/",
607            "accession": "IGVFSM9856IYBQ",
608            "status": "preview"
609        },
610        {
611            "@id": "/multiplexed-samples/IGVFSM6826DJHO/",
612            "accession": "IGVFSM6826DJHO",
613            "status": "preview"
614        },
615        {
616            "@id": "/multiplexed-samples/IGVFSM9062JOAG/",
617            "accession": "IGVFSM9062JOAG",
618            "status": "preview"
619        },
620        {
621            "@id": "/multiplexed-samples/IGVFSM5834DWZB/",
622            "accession": "IGVFSM5834DWZB",
623            "status": "preview"
624        }
625    ],
626    "origin_of": [],
627    "parts": [],
628    "pmi": 200,
629    "pmi_units": "minute",
630    "pooled_in": [],
631    "preservation_method": "flash-freezing",
632    "protocols": [
633        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
634    ],
635    "sample_terms": [
636        {
637            "@id": "/sample-terms/UBERON_0002740/",
638            "status": "preview",
639            "term_name": "posterior cingulate gyrus"
640        }
641    ],
642    "schema_version": "21",
643    "sex": "male",
644    "sorted_fractions": [],
645    "sources": [
646        {
647            "@id": "/sources/banner-health/",
648            "status": "released",
649            "title": "Banner Health"
650        }
651    ],
652    "status": "preview",
653    "submitted_by": {
654        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
655        "title": "Ryan Corces"
656    },
657    "summary": "Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy",
658    "taxa": "Homo sapiens",
659    "upper_bound_age": 80,
660    "upper_bound_age_in_hours": 700800,
661    "uuid": "8b926710-a6c2-4d97-97d3-d6dd05195855",
662    "virtual": false
663}