{
"@context": "/terms/",
"@id": "/tissues/IGVFSM6373BFAS/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6373BFAS",
"age": "89",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN1827_CING_B1"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM6373BFAS](/tissues/IGVFSM6373BFAS/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM6373BFAS/"
},
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM6373BFAS](/tissues/IGVFSM6373BFAS/) has in progress subobject phenotype term [DOID_0080832](/phenotype-terms/DOID_0080832/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM6373BFAS/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM6373BFAS](/tissues/IGVFSM6373BFAS/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM6373BFAS/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T12:58:27.992409+00:00",
"date_obtained": "2023-03-09",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO1797DNPW/",
"accession": "IGVFDO1797DNPW",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS3148PUJM/",
"accession": "IGVFDS3148PUJM",
"aliases": [
"igvf:corces_measurementSet_X042_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0551JWHB/",
"accession": "IGVFDS0551JWHB",
"aliases": [
"igvf:corces_measurementSet_X042_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6059WKSH/",
"accession": "IGVFDS6059WKSH",
"aliases": [
"igvf:corces_measurementSet_X042_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5672IBLK/",
"accession": "IGVFDS5672IBLK",
"aliases": [
"igvf:corces_measurementSet_X042_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5571QAYO/",
"accession": "IGVFDS5571QAYO",
"aliases": [
"igvf:corces_measurementSet_X042_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8148USUN/",
"accession": "IGVFDS8148USUN",
"aliases": [
"igvf:corces_measurementSet_X042_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3141FRLK/",
"accession": "IGVFDS3141FRLK",
"aliases": [
"igvf:corces_measurementSet_X042_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6532IRJT/",
"accession": "IGVFDS6532IRJT",
"aliases": [
"igvf:corces_measurementSet_X042_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6932ECNS/",
"accession": "IGVFDS6932ECNS",
"aliases": [
"igvf:corces_measurementSet_X042_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8894MIXR/",
"accession": "IGVFDS8894MIXR",
"aliases": [
"igvf:corces_measurementSet_X042_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0978UQYD/",
"accession": "IGVFDS0978UQYD",
"aliases": [
"igvf:corces_measurementSet_X042_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2377SEOL/",
"accession": "IGVFDS2377SEOL",
"aliases": [
"igvf:corces_measurementSet_X042_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2193DIJK/",
"accession": "IGVFDS2193DIJK",
"aliases": [
"igvf:corces_measurementSet_RP012_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7068ROMA/",
"accession": "IGVFDS7068ROMA",
"aliases": [
"igvf:corces_measurementSet_RP012_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3959TIPT/",
"accession": "IGVFDS3959TIPT",
"aliases": [
"igvf:corces_measurementSet_X042_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8659VRHH/",
"accession": "IGVFDS8659VRHH",
"aliases": [
"igvf:corces_measurementSet_X042_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1395GBFX/",
"accession": "IGVFDS1395GBFX",
"aliases": [
"igvf:corces_measurementSet_X042_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8219ZWGY/",
"accession": "IGVFDS8219ZWGY",
"aliases": [
"igvf:corces_measurementSet_X042_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0855IFDW/",
"accession": "IGVFDS0855IFDW",
"aliases": [
"igvf:corces_measurementSet_RP012_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1447ZIXP/",
"accession": "IGVFDS1447ZIXP",
"aliases": [
"igvf:corces_measurementSet_RP012_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3732KKVV/",
"accession": "IGVFDS3732KKVV",
"aliases": [
"igvf:corces_measurementSet_RP012_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7013MCCH/",
"accession": "IGVFDS7013MCCH",
"aliases": [
"igvf:corces_measurementSet_RP012_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1686QXQO/",
"accession": "IGVFDS1686QXQO",
"aliases": [
"igvf:corces_measurementSet_RP012_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5071AEIH/",
"accession": "IGVFDS5071AEIH",
"aliases": [
"igvf:corces_measurementSet_RP012_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7449XPIG/",
"accession": "IGVFDS7449XPIG",
"aliases": [
"igvf:corces_measurementSet_RP012_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0360VRTX/",
"accession": "IGVFDS0360VRTX",
"aliases": [
"igvf:corces_measurementSet_RP012_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5556IRJC/",
"accession": "IGVFDS5556IRJC",
"aliases": [
"igvf:corces_measurementSet_RP012_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4665BFMR/",
"accession": "IGVFDS4665BFMR",
"aliases": [
"igvf:corces_measurementSet_RP012_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8336JFEI/",
"accession": "IGVFDS8336JFEI",
"aliases": [
"igvf:corces_measurementSet_RP012_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9129KQZH/",
"accession": "IGVFDS9129KQZH",
"aliases": [
"igvf:corces_measurementSet_RP012_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7801ASCP/",
"accession": "IGVFDS7801ASCP",
"aliases": [
"igvf:corces_measurementSet_RP012_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7235JXKZ/",
"accession": "IGVFDS7235JXKZ",
"aliases": [
"igvf:corces_measurementSet_RP012_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 89,
"lower_bound_age_in_hours": 779640,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM2480DKQY/",
"accession": "IGVFSM2480DKQY",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1132ELYG/",
"accession": "IGVFSM1132ELYG",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3739CWYU/",
"accession": "IGVFSM3739CWYU",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6255JGZM/",
"accession": "IGVFSM6255JGZM",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1167MABH/",
"accession": "IGVFSM1167MABH",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2293QQTO/",
"accession": "IGVFSM2293QQTO",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0752KTLR/",
"accession": "IGVFSM0752KTLR",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8971IRDZ/",
"accession": "IGVFSM8971IRDZ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9775XYEX/",
"accession": "IGVFSM9775XYEX",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3226MLFV/",
"accession": "IGVFSM3226MLFV",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM5046SGAL/",
"accession": "IGVFSM5046SGAL",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9167CXIN/",
"accession": "IGVFSM9167CXIN",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1205XBBX/",
"accession": "IGVFSM1205XBBX",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6267UURV/",
"accession": "IGVFSM6267UURV",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3122KACM/",
"accession": "IGVFSM3122KACM",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9610QWFB/",
"accession": "IGVFSM9610QWFB",
"status": "preview"
}
],
"origin_of": [],
"part_of": "/tissues/IGVFSM3467PFHQ/",
"parts": [],
"pmi": 251,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002740/",
"status": "preview",
"term_name": "posterior cingulate gyrus"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 89 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment",
"taxa": "Homo sapiens",
"upper_bound_age": 89,
"upper_bound_age_in_hours": 779640,
"uuid": "e864c962-3305-4c46-acf5-bcbc9da24b1d",
"virtual": false
}