cerebellar cortex — IGVFSM6274HZKR

preview
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM6274HZKR/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM6274HZKR",
11    "age": "80",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1614_CBL_B1"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM6274HZKR](/tissues/IGVFSM6274HZKR/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM6274HZKR/"
25            },
26            {
27                "category": "mismatched status",
28                "detail": "Preview tissue [IGVFSM6274HZKR](/tissues/IGVFSM6274HZKR/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_item_status",
32                "path": "/tissues/IGVFSM6274HZKR/"
33            },
34            {
35                "category": "mismatched status",
36                "detail": "Preview tissue [IGVFSM6274HZKR](/tissues/IGVFSM6274HZKR/) has in progress subobject phenotype term [DOID_0080832](/phenotype-terms/DOID_0080832/).",
37                "level": 30,
38                "level_name": "INTERNAL_ACTION",
39                "name": "audit_item_status",
40                "path": "/tissues/IGVFSM6274HZKR/"
41            },
42            {
43                "category": "missing CCF ID",
44                "detail": "Tissue [IGVFSM6274HZKR](/tissues/IGVFSM6274HZKR/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
45                "level": 30,
46                "level_name": "INTERNAL_ACTION",
47                "name": "audit_tissue_ccf_id",
48                "path": "/tissues/IGVFSM6274HZKR/"
49            }
50        ]
51    },
52    "award": {
53        "@id": "/awards/HG012076/",
54        "component": "mapping"
55    },
56    "classifications": [
57        "tissue"
58    ],
59    "creation_timestamp": "2025-03-19T12:57:28.094934+00:00",
60    "date_obtained": "2022-10-24",
61    "disease_terms": [
62        {
63            "@id": "/phenotype-terms/DOID_14330/",
64            "status": "in progress",
65            "term_name": "Parkinson's disease"
66        },
67        {
68            "@id": "/phenotype-terms/DOID_9246/",
69            "status": "in progress",
70            "term_name": "cerebral amyloid angiopathy"
71        },
72        {
73            "@id": "/phenotype-terms/DOID_0080832/",
74            "status": "in progress",
75            "term_name": "mild cognitive impairment"
76        }
77    ],
78    "donors": [
79        {
80            "@id": "/human-donors/IGVFDO7227BIXW/",
81            "accession": "IGVFDO7227BIXW",
82            "ethnicities": [
83                "European"
84            ],
85            "status": "preview"
86        }
87    ],
88    "file_sets": [
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91            "accession": "IGVFDS3906MJRZ",
92            "aliases": [
93                "igvf:corces_measurementSet_X010_G3_ATAC"
94            ],
95            "file_set_type": "experimental data",
96            "lab": {
97                "title": "Ryan Corces, Gladstone Institute UCSF"
98            },
99            "preferred_assay_title": "10x multiome",
100            "status": "preview",
101            "summary": "single-nucleus ATAC-seq (10x multiome)"
102        },
103        {
104            "@id": "/measurement-sets/IGVFDS3523OUSU/",
105            "accession": "IGVFDS3523OUSU",
106            "aliases": [
107                "igvf:corces_measurementSet_X010_G3_RNA"
108            ],
109            "file_set_type": "experimental data",
110            "lab": {
111                "title": "Ryan Corces, Gladstone Institute UCSF"
112            },
113            "preferred_assay_title": "10x multiome",
114            "status": "preview",
115            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
116        },
117        {
118            "@id": "/measurement-sets/IGVFDS3082IAKC/",
119            "accession": "IGVFDS3082IAKC",
120            "aliases": [
121                "igvf:corces_measurementSet_X010_G1_ATAC"
122            ],
123            "file_set_type": "experimental data",
124            "lab": {
125                "title": "Ryan Corces, Gladstone Institute UCSF"
126            },
127            "preferred_assay_title": "10x multiome",
128            "status": "preview",
129            "summary": "single-nucleus ATAC-seq (10x multiome)"
130        },
131        {
132            "@id": "/measurement-sets/IGVFDS2742JUQC/",
133            "accession": "IGVFDS2742JUQC",
134            "aliases": [
135                "igvf:corces_measurementSet_X010_G1_RNA"
136            ],
137            "file_set_type": "experimental data",
138            "lab": {
139                "title": "Ryan Corces, Gladstone Institute UCSF"
140            },
141            "preferred_assay_title": "10x multiome",
142            "status": "preview",
143            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
144        },
145        {
146            "@id": "/measurement-sets/IGVFDS2695QSNJ/",
147            "accession": "IGVFDS2695QSNJ",
148            "aliases": [
149                "igvf:corces_measurementSet_X010_G6_ATAC"
150            ],
151            "file_set_type": "experimental data",
152            "lab": {
153                "title": "Ryan Corces, Gladstone Institute UCSF"
154            },
155            "preferred_assay_title": "10x multiome",
156            "status": "preview",
157            "summary": "single-nucleus ATAC-seq (10x multiome)"
158        },
159        {
160            "@id": "/measurement-sets/IGVFDS8788ZHNN/",
161            "accession": "IGVFDS8788ZHNN",
162            "aliases": [
163                "igvf:corces_measurementSet_X010_G6_RNA"
164            ],
165            "file_set_type": "experimental data",
166            "lab": {
167                "title": "Ryan Corces, Gladstone Institute UCSF"
168            },
169            "preferred_assay_title": "10x multiome",
170            "status": "preview",
171            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
172        },
173        {
174            "@id": "/measurement-sets/IGVFDS8437JRRP/",
175            "accession": "IGVFDS8437JRRP",
176            "aliases": [
177                "igvf:corces_measurementSet_X010_G7_ATAC"
178            ],
179            "file_set_type": "experimental data",
180            "lab": {
181                "title": "Ryan Corces, Gladstone Institute UCSF"
182            },
183            "preferred_assay_title": "10x multiome",
184            "status": "preview",
185            "summary": "single-nucleus ATAC-seq (10x multiome)"
186        },
187        {
188            "@id": "/measurement-sets/IGVFDS9790PNTZ/",
189            "accession": "IGVFDS9790PNTZ",
190            "aliases": [
191                "igvf:corces_measurementSet_X010_G7_RNA"
192            ],
193            "file_set_type": "experimental data",
194            "lab": {
195                "title": "Ryan Corces, Gladstone Institute UCSF"
196            },
197            "preferred_assay_title": "10x multiome",
198            "status": "preview",
199            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
200        },
201        {
202            "@id": "/measurement-sets/IGVFDS7866JXEW/",
203            "accession": "IGVFDS7866JXEW",
204            "aliases": [
205                "igvf:corces_measurementSet_X010_G8_ATAC"
206            ],
207            "file_set_type": "experimental data",
208            "lab": {
209                "title": "Ryan Corces, Gladstone Institute UCSF"
210            },
211            "preferred_assay_title": "10x multiome",
212            "status": "preview",
213            "summary": "single-nucleus ATAC-seq (10x multiome)"
214        },
215        {
216            "@id": "/measurement-sets/IGVFDS9655EEFO/",
217            "accession": "IGVFDS9655EEFO",
218            "aliases": [
219                "igvf:corces_measurementSet_X010_G8_RNA"
220            ],
221            "file_set_type": "experimental data",
222            "lab": {
223                "title": "Ryan Corces, Gladstone Institute UCSF"
224            },
225            "preferred_assay_title": "10x multiome",
226            "status": "preview",
227            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
228        },
229        {
230            "@id": "/measurement-sets/IGVFDS5532ZXNF/",
231            "accession": "IGVFDS5532ZXNF",
232            "aliases": [
233                "igvf:corces_measurementSet_X010_G4_ATAC"
234            ],
235            "file_set_type": "experimental data",
236            "lab": {
237                "title": "Ryan Corces, Gladstone Institute UCSF"
238            },
239            "preferred_assay_title": "10x multiome",
240            "status": "preview",
241            "summary": "single-nucleus ATAC-seq (10x multiome)"
242        },
243        {
244            "@id": "/measurement-sets/IGVFDS5869YFNA/",
245            "accession": "IGVFDS5869YFNA",
246            "aliases": [
247                "igvf:corces_measurementSet_X010_G4_RNA"
248            ],
249            "file_set_type": "experimental data",
250            "lab": {
251                "title": "Ryan Corces, Gladstone Institute UCSF"
252            },
253            "preferred_assay_title": "10x multiome",
254            "status": "preview",
255            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
256        },
257        {
258            "@id": "/measurement-sets/IGVFDS2046NYYD/",
259            "accession": "IGVFDS2046NYYD",
260            "aliases": [
261                "igvf:corces_measurementSet_X010_G5_ATAC"
262            ],
263            "file_set_type": "experimental data",
264            "lab": {
265                "title": "Ryan Corces, Gladstone Institute UCSF"
266            },
267            "preferred_assay_title": "10x multiome",
268            "status": "preview",
269            "summary": "single-nucleus ATAC-seq (10x multiome)"
270        },
271        {
272            "@id": "/measurement-sets/IGVFDS6610EBRU/",
273            "accession": "IGVFDS6610EBRU",
274            "aliases": [
275                "igvf:corces_measurementSet_X010_G5_RNA"
276            ],
277            "file_set_type": "experimental data",
278            "lab": {
279                "title": "Ryan Corces, Gladstone Institute UCSF"
280            },
281            "preferred_assay_title": "10x multiome",
282            "status": "preview",
283            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
284        },
285        {
286            "@id": "/measurement-sets/IGVFDS2673QZAP/",
287            "accession": "IGVFDS2673QZAP",
288            "aliases": [
289                "igvf:corces_measurementSet_X010_G2_ATAC"
290            ],
291            "file_set_type": "experimental data",
292            "lab": {
293                "title": "Ryan Corces, Gladstone Institute UCSF"
294            },
295            "preferred_assay_title": "10x multiome",
296            "status": "preview",
297            "summary": "single-nucleus ATAC-seq (10x multiome)"
298        },
299        {
300            "@id": "/measurement-sets/IGVFDS6589NGAU/",
301            "accession": "IGVFDS6589NGAU",
302            "aliases": [
303                "igvf:corces_measurementSet_X010_G2_RNA"
304            ],
305            "file_set_type": "experimental data",
306            "lab": {
307                "title": "Ryan Corces, Gladstone Institute UCSF"
308            },
309            "preferred_assay_title": "10x multiome",
310            "status": "preview",
311            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
312        },
313        {
314            "@id": "/measurement-sets/IGVFDS3205MIGH/",
315            "accession": "IGVFDS3205MIGH",
316            "aliases": [
317                "igvf:corces_measurementSet_RP002_G1_ATAC"
318            ],
319            "file_set_type": "experimental data",
320            "lab": {
321                "title": "Ryan Corces, Gladstone Institute UCSF"
322            },
323            "preferred_assay_title": "10x multiome",
324            "status": "preview",
325            "summary": "single-nucleus ATAC-seq (10x multiome)"
326        },
327        {
328            "@id": "/measurement-sets/IGVFDS3912RWNQ/",
329            "accession": "IGVFDS3912RWNQ",
330            "aliases": [
331                "igvf:corces_measurementSet_RP002_G1_RNA"
332            ],
333            "file_set_type": "experimental data",
334            "lab": {
335                "title": "Ryan Corces, Gladstone Institute UCSF"
336            },
337            "preferred_assay_title": "10x multiome",
338            "status": "preview",
339            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
340        },
341        {
342            "@id": "/measurement-sets/IGVFDS1915XQPY/",
343            "accession": "IGVFDS1915XQPY",
344            "aliases": [
345                "igvf:corces_measurementSet_RP002_G2_ATAC"
346            ],
347            "file_set_type": "experimental data",
348            "lab": {
349                "title": "Ryan Corces, Gladstone Institute UCSF"
350            },
351            "preferred_assay_title": "10x multiome",
352            "status": "preview",
353            "summary": "single-nucleus ATAC-seq (10x multiome)"
354        },
355        {
356            "@id": "/measurement-sets/IGVFDS7046AXFV/",
357            "accession": "IGVFDS7046AXFV",
358            "aliases": [
359                "igvf:corces_measurementSet_RP002_G2_RNA"
360            ],
361            "file_set_type": "experimental data",
362            "lab": {
363                "title": "Ryan Corces, Gladstone Institute UCSF"
364            },
365            "preferred_assay_title": "10x multiome",
366            "status": "preview",
367            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
368        },
369        {
370            "@id": "/measurement-sets/IGVFDS3248CAFJ/",
371            "accession": "IGVFDS3248CAFJ",
372            "aliases": [
373                "igvf:corces_measurementSet_RP002_G3_ATAC"
374            ],
375            "file_set_type": "experimental data",
376            "lab": {
377                "title": "Ryan Corces, Gladstone Institute UCSF"
378            },
379            "preferred_assay_title": "10x multiome",
380            "status": "preview",
381            "summary": "single-nucleus ATAC-seq (10x multiome)"
382        },
383        {
384            "@id": "/measurement-sets/IGVFDS1304MSEA/",
385            "accession": "IGVFDS1304MSEA",
386            "aliases": [
387                "igvf:corces_measurementSet_RP002_G3_RNA"
388            ],
389            "file_set_type": "experimental data",
390            "lab": {
391                "title": "Ryan Corces, Gladstone Institute UCSF"
392            },
393            "preferred_assay_title": "10x multiome",
394            "status": "preview",
395            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
396        },
397        {
398            "@id": "/measurement-sets/IGVFDS9516JWYR/",
399            "accession": "IGVFDS9516JWYR",
400            "aliases": [
401                "igvf:corces_measurementSet_RP002_G5_ATAC"
402            ],
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404            "lab": {
405                "title": "Ryan Corces, Gladstone Institute UCSF"
406            },
407            "preferred_assay_title": "10x multiome",
408            "status": "preview",
409            "summary": "single-nucleus ATAC-seq (10x multiome)"
410        },
411        {
412            "@id": "/measurement-sets/IGVFDS1921IDBT/",
413            "accession": "IGVFDS1921IDBT",
414            "aliases": [
415                "igvf:corces_measurementSet_RP002_G5_RNA"
416            ],
417            "file_set_type": "experimental data",
418            "lab": {
419                "title": "Ryan Corces, Gladstone Institute UCSF"
420            },
421            "preferred_assay_title": "10x multiome",
422            "status": "preview",
423            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
424        },
425        {
426            "@id": "/measurement-sets/IGVFDS9083ZGEJ/",
427            "accession": "IGVFDS9083ZGEJ",
428            "aliases": [
429                "igvf:corces_measurementSet_RP002_G7_ATAC"
430            ],
431            "file_set_type": "experimental data",
432            "lab": {
433                "title": "Ryan Corces, Gladstone Institute UCSF"
434            },
435            "preferred_assay_title": "10x multiome",
436            "status": "preview",
437            "summary": "single-nucleus ATAC-seq (10x multiome)"
438        },
439        {
440            "@id": "/measurement-sets/IGVFDS5273QVEC/",
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442            "aliases": [
443                "igvf:corces_measurementSet_RP002_G7_RNA"
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446            "lab": {
447                "title": "Ryan Corces, Gladstone Institute UCSF"
448            },
449            "preferred_assay_title": "10x multiome",
450            "status": "preview",
451            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
452        },
453        {
454            "@id": "/measurement-sets/IGVFDS2890YOZM/",
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460            "lab": {
461                "title": "Ryan Corces, Gladstone Institute UCSF"
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464            "status": "preview",
465            "summary": "single-nucleus ATAC-seq (10x multiome)"
466        },
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474            "lab": {
475                "title": "Ryan Corces, Gladstone Institute UCSF"
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478            "status": "preview",
479            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
480        },
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489                "title": "Ryan Corces, Gladstone Institute UCSF"
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492            "status": "preview",
493            "summary": "single-nucleus ATAC-seq (10x multiome)"
494        },
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502            "lab": {
503                "title": "Ryan Corces, Gladstone Institute UCSF"
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506            "status": "preview",
507            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
508        },
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517                "title": "Ryan Corces, Gladstone Institute UCSF"
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519            "preferred_assay_title": "10x multiome",
520            "status": "preview",
521            "summary": "single-nucleus ATAC-seq (10x multiome)"
522        },
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529            "file_set_type": "experimental data",
530            "lab": {
531                "title": "Ryan Corces, Gladstone Institute UCSF"
532            },
533            "preferred_assay_title": "10x multiome",
534            "status": "preview",
535            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
536        }
537    ],
538    "institutional_certificates": [
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541            "certificate_identifier": "IP115-05",
542            "controlled_access": false,
543            "status": "in progress"
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546    "lab": {
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548        "title": "Ryan Corces, Gladstone Institute UCSF"
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550    "lower_bound_age": 80,
551    "lower_bound_age_in_hours": 700800,
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571            "status": "preview"
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576            "status": "preview"
577        },
578        {
579            "@id": "/multiplexed-samples/IGVFSM9228FDFE/",
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611            "status": "preview"
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616            "status": "preview"
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618        {
619            "@id": "/multiplexed-samples/IGVFSM7029TFEQ/",
620            "accession": "IGVFSM7029TFEQ",
621            "status": "preview"
622        },
623        {
624            "@id": "/multiplexed-samples/IGVFSM6197WJXN/",
625            "accession": "IGVFSM6197WJXN",
626            "status": "preview"
627        },
628        {
629            "@id": "/multiplexed-samples/IGVFSM9681MUTW/",
630            "accession": "IGVFSM9681MUTW",
631            "status": "preview"
632        }
633    ],
634    "origin_of": [],
635    "part_of": "/tissues/IGVFSM5341TCWU/",
636    "parts": [],
637    "pmi": 156,
638    "pmi_units": "minute",
639    "pooled_in": [],
640    "preservation_method": "flash-freezing",
641    "protocols": [
642        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
643    ],
644    "sample_terms": [
645        {
646            "@id": "/sample-terms/UBERON_0002129/",
647            "status": "preview",
648            "term_name": "cerebellar cortex"
649        }
650    ],
651    "schema_version": "21",
652    "sex": "male",
653    "sorted_fractions": [],
654    "sources": [
655        {
656            "@id": "/sources/banner-health/",
657            "status": "released",
658            "title": "Banner Health"
659        }
660    ],
661    "status": "preview",
662    "submitted_by": {
663        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
664        "title": "Ryan Corces"
665    },
666    "summary": "Homo sapiens (male, 80 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment",
667    "taxa": "Homo sapiens",
668    "upper_bound_age": 80,
669    "upper_bound_age_in_hours": 700800,
670    "uuid": "9bbe8eb8-70f2-4837-9eec-daaee0b1b89d",
671    "virtual": false
672}