{
"@context": "/terms/",
"@id": "/tissues/IGVFSM6118HVCN/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6118HVCN",
"age": "72",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN1504_MTG_B1"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM6118HVCN](/tissues/IGVFSM6118HVCN/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM6118HVCN/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM6118HVCN](/tissues/IGVFSM6118HVCN/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM6118HVCN/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T12:58:19.858985+00:00",
"date_obtained": "2023-02-15",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO7815RLQM/",
"accession": "IGVFDO7815RLQM",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS4687NIDM/",
"accession": "IGVFDS4687NIDM",
"aliases": [
"igvf:corces_measurementSet_X038_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6332PVTL/",
"accession": "IGVFDS6332PVTL",
"aliases": [
"igvf:corces_measurementSet_X038_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2753IVGH/",
"accession": "IGVFDS2753IVGH",
"aliases": [
"igvf:corces_measurementSet_X038_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5070YLLC/",
"accession": "IGVFDS5070YLLC",
"aliases": [
"igvf:corces_measurementSet_X038_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5655FKDO/",
"accession": "IGVFDS5655FKDO",
"aliases": [
"igvf:corces_measurementSet_X038_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4112KBND/",
"accession": "IGVFDS4112KBND",
"aliases": [
"igvf:corces_measurementSet_X038_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9140MDGR/",
"accession": "IGVFDS9140MDGR",
"aliases": [
"igvf:corces_measurementSet_X038_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7496XKTN/",
"accession": "IGVFDS7496XKTN",
"aliases": [
"igvf:corces_measurementSet_X038_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5965OBYQ/",
"accession": "IGVFDS5965OBYQ",
"aliases": [
"igvf:corces_measurementSet_X038_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9793XAEK/",
"accession": "IGVFDS9793XAEK",
"aliases": [
"igvf:corces_measurementSet_X038_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5515JWQG/",
"accession": "IGVFDS5515JWQG",
"aliases": [
"igvf:corces_measurementSet_X038_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3689JVVJ/",
"accession": "IGVFDS3689JVVJ",
"aliases": [
"igvf:corces_measurementSet_X038_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4084LQYP/",
"accession": "IGVFDS4084LQYP",
"aliases": [
"igvf:corces_measurementSet_X038_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8196BIHW/",
"accession": "IGVFDS8196BIHW",
"aliases": [
"igvf:corces_measurementSet_X038_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5459UKQP/",
"accession": "IGVFDS5459UKQP",
"aliases": [
"igvf:corces_measurementSet_X038_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5295OUVQ/",
"accession": "IGVFDS5295OUVQ",
"aliases": [
"igvf:corces_measurementSet_X038_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6783ZBOV/",
"accession": "IGVFDS6783ZBOV",
"aliases": [
"igvf:corces_measurementSet_RP009_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3214ILJT/",
"accession": "IGVFDS3214ILJT",
"aliases": [
"igvf:corces_measurementSet_RP009_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8552LVZZ/",
"accession": "IGVFDS8552LVZZ",
"aliases": [
"igvf:corces_measurementSet_RP009_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6296ORZC/",
"accession": "IGVFDS6296ORZC",
"aliases": [
"igvf:corces_measurementSet_RP009_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6561ZEIK/",
"accession": "IGVFDS6561ZEIK",
"aliases": [
"igvf:corces_measurementSet_RP009_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8191ULWV/",
"accession": "IGVFDS8191ULWV",
"aliases": [
"igvf:corces_measurementSet_RP009_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9247TMEL/",
"accession": "IGVFDS9247TMEL",
"aliases": [
"igvf:corces_measurementSet_RP009_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8957DHSL/",
"accession": "IGVFDS8957DHSL",
"aliases": [
"igvf:corces_measurementSet_RP009_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9058STTC/",
"accession": "IGVFDS9058STTC",
"aliases": [
"igvf:corces_measurementSet_RP009_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3397BHVF/",
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"igvf:corces_measurementSet_RP009_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7477IHEZ/",
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],
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"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
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"igvf:corces_measurementSet_RP009_G5_RNA"
],
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"lab": {
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},
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"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
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],
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"lab": {
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},
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"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
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],
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"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5208BPDO/",
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"igvf:corces_measurementSet_RP009_G7_ATAC"
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"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2993TBQL/",
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"aliases": [
"igvf:corces_measurementSet_RP009_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
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"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 72,
"lower_bound_age_in_hours": 630720,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM1975ZGXC/",
"accession": "IGVFSM1975ZGXC",
"status": "preview"
},
{
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},
{
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},
{
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"accession": "IGVFSM9167BOAS",
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},
{
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},
{
"@id": "/multiplexed-samples/IGVFSM8997BRSW/",
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},
{
"@id": "/multiplexed-samples/IGVFSM6450TAPI/",
"accession": "IGVFSM6450TAPI",
"status": "preview"
},
{
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"accession": "IGVFSM4050UUIC",
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},
{
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"accession": "IGVFSM9488DNCQ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1206IWFU/",
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"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6201VKVB/",
"accession": "IGVFSM6201VKVB",
"status": "preview"
},
{
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"accession": "IGVFSM3263SQDP",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9386ETNP/",
"accession": "IGVFSM9386ETNP",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3999SNMB/",
"accession": "IGVFSM3999SNMB",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3842WIDQ/",
"accession": "IGVFSM3842WIDQ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6972ZZKH/",
"accession": "IGVFSM6972ZZKH",
"status": "preview"
}
],
"origin_of": [],
"part_of": "/tissues/IGVFSM2373QJFB/",
"parts": [],
"pmi": 215,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"schema_version": "21",
"sex": "female",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (female, 72 years) middle temporal gyrus tissue associated with Parkinson's disease",
"taxa": "Homo sapiens",
"upper_bound_age": 72,
"upper_bound_age_in_hours": 630720,
"uuid": "c1d50c01-88e8-4ac2-ae8c-a57e6c393d7e",
"virtual": false
}