substantia nigra — IGVFSM6107UJUH

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Summary

Homo sapiens (male, 80 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment

Sample Terms

substantia nigra

Sex

male

Age

80 years

Post-mortem Interval

156 minutes

Preservation Method

flash-freezing

Taxa

Homo sapiens

Sources

Date Harvested

March 15, 2023

Aliases

igvf:corces_tissue_BANN1614_SN

Protocols

https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw

Donors

1 item

Accession

Aliases

Sex

Taxa

igvf:corces_donor_BANN1614

male

Homo sapiens

File Sets

32 items

single-nucleus RNA sequencing assay (10x multiome)

igvf:corces_measurementSet_X045_G7_RNA

Ryan Corces, Gladstone Institute UCSF

single-nucleus RNA sequencing assay (10x multiome)

igvf:corces_measurementSet_RP008_G2_RNA

Ryan Corces, Gladstone Institute UCSF

single-nucleus ATAC-seq (10x multiome)

igvf:corces_measurementSet_X045_G4_ATAC

Ryan Corces, Gladstone Institute UCSF

single-nucleus RNA sequencing assay (10x multiome)

igvf:corces_measurementSet_RP008_G6_RNA

Ryan Corces, Gladstone Institute UCSF

single-nucleus ATAC-seq (10x multiome)

igvf:corces_measurementSet_RP008_G7_ATAC

Ryan Corces, Gladstone Institute UCSF

single-nucleus ATAC-seq (10x multiome)

igvf:corces_measurementSet_X045_G1_ATAC

Ryan Corces, Gladstone Institute UCSF

single-nucleus RNA sequencing assay (10x multiome)

igvf:corces_measurementSet_X045_G2_RNA

Ryan Corces, Gladstone Institute UCSF

single-nucleus RNA sequencing assay (10x multiome)

igvf:corces_measurementSet_X045_G8_RNA

Ryan Corces, Gladstone Institute UCSF

single-nucleus ATAC-seq (10x multiome)

igvf:corces_measurementSet_RP008_G6_ATAC

Ryan Corces, Gladstone Institute UCSF

single-nucleus ATAC-seq (10x multiome)

igvf:corces_measurementSet_X045_G6_ATAC

Ryan Corces, Gladstone Institute UCSF

Multiplexed In Samples

16 items

Sample Terms

Disease Terms

Summary

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples

Attribution

Award

Principal Investigator(s)

Ansuman Satpathy

Contact P.I.

Ansuman Satpathy

Lab

Ryan Corces, Gladstone Institute UCSF