{
"@context": "/terms/",
"@id": "/tissues/IGVFSM5842POCX/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5842POCX",
"age": "74",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN0218_MTG_B1"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM5842POCX](/tissues/IGVFSM5842POCX/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM5842POCX/"
},
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM5842POCX](/tissues/IGVFSM5842POCX/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM5842POCX/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM5842POCX](/tissues/IGVFSM5842POCX/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM5842POCX/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T12:57:15.744626+00:00",
"date_obtained": "2022-10-04",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO0112XZXT/",
"accession": "IGVFDO0112XZXT",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS3200KMON/",
"accession": "IGVFDS3200KMON",
"aliases": [
"igvf:corces_measurementSet_X005_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5901XMYG/",
"accession": "IGVFDS5901XMYG",
"aliases": [
"igvf:corces_measurementSet_X005_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6220HECG/",
"accession": "IGVFDS6220HECG",
"aliases": [
"igvf:corces_measurementSet_X005_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2328NLDU/",
"accession": "IGVFDS2328NLDU",
"aliases": [
"igvf:corces_measurementSet_X005_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3572LAIM/",
"accession": "IGVFDS3572LAIM",
"aliases": [
"igvf:corces_measurementSet_X005_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2253HXOS/",
"accession": "IGVFDS2253HXOS",
"aliases": [
"igvf:corces_measurementSet_X005_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9627VAJD/",
"accession": "IGVFDS9627VAJD",
"aliases": [
"igvf:corces_measurementSet_X005_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0104JXQJ/",
"accession": "IGVFDS0104JXQJ",
"aliases": [
"igvf:corces_measurementSet_X005_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1493FGGS/",
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"aliases": [
"igvf:corces_measurementSet_X005_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8965MWPW/",
"accession": "IGVFDS8965MWPW",
"aliases": [
"igvf:corces_measurementSet_X005_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8054AHNJ/",
"accession": "IGVFDS8054AHNJ",
"aliases": [
"igvf:corces_measurementSet_X005_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8119MEID/",
"accession": "IGVFDS8119MEID",
"aliases": [
"igvf:corces_measurementSet_X005_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6879FAZM/",
"accession": "IGVFDS6879FAZM",
"aliases": [
"igvf:corces_measurementSet_X005_G4_ATAC"
],
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"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9679YVOU/",
"accession": "IGVFDS9679YVOU",
"aliases": [
"igvf:corces_measurementSet_X005_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1448UYDZ/",
"accession": "IGVFDS1448UYDZ",
"aliases": [
"igvf:corces_measurementSet_X005_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7244FXKA/",
"accession": "IGVFDS7244FXKA",
"aliases": [
"igvf:corces_measurementSet_X005_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7591HPZZ/",
"accession": "IGVFDS7591HPZZ",
"aliases": [
"igvf:corces_measurementSet_RP003_G11_ATAC"
],
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"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
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"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3094GPXN/",
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],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
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],
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},
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"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
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},
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},
{
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"igvf:corces_measurementSet_RP003_G10_ATAC"
],
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"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4160BSWK/",
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],
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"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
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],
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"lab": {
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},
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"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
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],
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"lab": {
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},
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"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
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"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
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},
{
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},
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"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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"lab": {
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},
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},
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},
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},
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},
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"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
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}
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},
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},
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},
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},
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},
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},
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},
{
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},
{
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}
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"parts": [],
"pmi": 240,
"pmi_units": "minute",
"pooled_in": [],
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],
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{
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"term_name": "middle temporal gyrus"
}
],
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{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 74 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy",
"taxa": "Homo sapiens",
"upper_bound_age": 74,
"upper_bound_age_in_hours": 648240,
"uuid": "b622460d-0408-4c96-a180-24e9d11ed398",
"virtual": false
}