{
"@context": "/terms/",
"@id": "/tissues/IGVFSM5545REZS/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5545REZS",
"age": "81",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN2057_CING_B1"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM5545REZS](/tissues/IGVFSM5545REZS/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM5545REZS/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T12:57:09.198312+00:00",
"date_obtained": "2022-09-01",
"donors": [
{
"@id": "/human-donors/IGVFDO4825ZGIS/",
"accession": "IGVFDO4825ZGIS",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS8859FDEI/",
"accession": "IGVFDS8859FDEI",
"aliases": [
"igvf:corces_measurementSet_RP015_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9670KNNR/",
"accession": "IGVFDS9670KNNR",
"aliases": [
"igvf:corces_measurementSet_RP015_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1451RVGA/",
"accession": "IGVFDS1451RVGA",
"aliases": [
"igvf:corces_measurementSet_RP015_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0488NVQB/",
"accession": "IGVFDS0488NVQB",
"aliases": [
"igvf:corces_measurementSet_RP015_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0737RQRG/",
"accession": "IGVFDS0737RQRG",
"aliases": [
"igvf:corces_measurementSet_RP015_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7340HYVJ/",
"accession": "IGVFDS7340HYVJ",
"aliases": [
"igvf:corces_measurementSet_RP015_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9379ZJGH/",
"accession": "IGVFDS9379ZJGH",
"aliases": [
"igvf:corces_measurementSet_RP015_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2939KDMY/",
"accession": "IGVFDS2939KDMY",
"aliases": [
"igvf:corces_measurementSet_RP015_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"data_use_limitation_summary": "No limitations",
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 81,
"lower_bound_age_in_hours": 709560,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM3324TBYQ/",
"accession": "IGVFSM3324TBYQ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0903NROD/",
"accession": "IGVFSM0903NROD",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0218TRNG/",
"accession": "IGVFSM0218TRNG",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1969WJDB/",
"accession": "IGVFSM1969WJDB",
"status": "preview"
}
],
"origin_of": [],
"part_of": "/tissues/IGVFSM1406EPPF/",
"parts": [],
"pmi": 275,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002740/",
"status": "preview",
"term_name": "posterior cingulate gyrus"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 81 years) posterior cingulate gyrus tissue",
"taxa": "Homo sapiens",
"upper_bound_age": 81,
"upper_bound_age_in_hours": 709560,
"uuid": "f8aa4fb1-f989-418d-9d9e-65efc00e2035",
"virtual": false
}