putamen — IGVFSM5418PZBC

1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM5418PZBC/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM5418PZBC",
11    "age": "93",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1039_PUT"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing CCF ID",
20                "detail": "Tissue [IGVFSM5418PZBC](/tissues/IGVFSM5418PZBC/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_tissue_ccf_id",
24                "path": "/tissues/IGVFSM5418PZBC/"
25            }
26        ]
27    },
28    "award": {
29        "@id": "/awards/HG012076/",
30        "component": "mapping"
31    },
32    "classifications": [
33        "tissue"
34    ],
35    "creation_timestamp": "2025-03-19T04:12:54.097975+00:00",
36    "date_obtained": "2023-02-06",
37    "donors": [
38        {
39            "@id": "/human-donors/IGVFDO8817BLIU/",
40            "accession": "IGVFDO8817BLIU",
41            "ethnicities": [
42                "European"
43            ],
44            "status": "preview"
45        }
46    ],
47    "file_sets": [
48        {
49            "@id": "/measurement-sets/IGVFDS0975URDX/",
50            "accession": "IGVFDS0975URDX",
51            "aliases": [
52                "igvf:corces_measurementSet_X034_G1_ATAC"
53            ],
54            "file_set_type": "experimental data",
55            "lab": {
56                "title": "Ryan Corces, Gladstone Institute UCSF"
57            },
58            "preferred_assay_title": "10x multiome",
59            "status": "preview",
60            "summary": "single-nucleus ATAC-seq (10x multiome)"
61        },
62        {
63            "@id": "/measurement-sets/IGVFDS7327OCJZ/",
64            "accession": "IGVFDS7327OCJZ",
65            "aliases": [
66                "igvf:corces_measurementSet_X034_G1_RNA"
67            ],
68            "file_set_type": "experimental data",
69            "lab": {
70                "title": "Ryan Corces, Gladstone Institute UCSF"
71            },
72            "preferred_assay_title": "10x multiome",
73            "status": "preview",
74            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
75        },
76        {
77            "@id": "/measurement-sets/IGVFDS8053MEOI/",
78            "accession": "IGVFDS8053MEOI",
79            "aliases": [
80                "igvf:corces_measurementSet_X034_G3_ATAC"
81            ],
82            "file_set_type": "experimental data",
83            "lab": {
84                "title": "Ryan Corces, Gladstone Institute UCSF"
85            },
86            "preferred_assay_title": "10x multiome",
87            "status": "preview",
88            "summary": "single-nucleus ATAC-seq (10x multiome)"
89        },
90        {
91            "@id": "/measurement-sets/IGVFDS1792VRZK/",
92            "accession": "IGVFDS1792VRZK",
93            "aliases": [
94                "igvf:corces_measurementSet_X034_G3_RNA"
95            ],
96            "file_set_type": "experimental data",
97            "lab": {
98                "title": "Ryan Corces, Gladstone Institute UCSF"
99            },
100            "preferred_assay_title": "10x multiome",
101            "status": "preview",
102            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
103        },
104        {
105            "@id": "/measurement-sets/IGVFDS0242RAWE/",
106            "accession": "IGVFDS0242RAWE",
107            "aliases": [
108                "igvf:corces_measurementSet_X034_G7_ATAC"
109            ],
110            "file_set_type": "experimental data",
111            "lab": {
112                "title": "Ryan Corces, Gladstone Institute UCSF"
113            },
114            "preferred_assay_title": "10x multiome",
115            "status": "preview",
116            "summary": "single-nucleus ATAC-seq (10x multiome)"
117        },
118        {
119            "@id": "/measurement-sets/IGVFDS9592YGDY/",
120            "accession": "IGVFDS9592YGDY",
121            "aliases": [
122                "igvf:corces_measurementSet_X034_G7_RNA"
123            ],
124            "file_set_type": "experimental data",
125            "lab": {
126                "title": "Ryan Corces, Gladstone Institute UCSF"
127            },
128            "preferred_assay_title": "10x multiome",
129            "status": "preview",
130            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
131        },
132        {
133            "@id": "/measurement-sets/IGVFDS3761ALRH/",
134            "accession": "IGVFDS3761ALRH",
135            "aliases": [
136                "igvf:corces_measurementSet_X034_G2_ATAC"
137            ],
138            "file_set_type": "experimental data",
139            "lab": {
140                "title": "Ryan Corces, Gladstone Institute UCSF"
141            },
142            "preferred_assay_title": "10x multiome",
143            "status": "preview",
144            "summary": "single-nucleus ATAC-seq (10x multiome)"
145        },
146        {
147            "@id": "/measurement-sets/IGVFDS9719IXNV/",
148            "accession": "IGVFDS9719IXNV",
149            "aliases": [
150                "igvf:corces_measurementSet_X034_G2_RNA"
151            ],
152            "file_set_type": "experimental data",
153            "lab": {
154                "title": "Ryan Corces, Gladstone Institute UCSF"
155            },
156            "preferred_assay_title": "10x multiome",
157            "status": "preview",
158            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
159        },
160        {
161            "@id": "/measurement-sets/IGVFDS6142YJCU/",
162            "accession": "IGVFDS6142YJCU",
163            "aliases": [
164                "igvf:corces_measurementSet_X034_G5_ATAC"
165            ],
166            "file_set_type": "experimental data",
167            "lab": {
168                "title": "Ryan Corces, Gladstone Institute UCSF"
169            },
170            "preferred_assay_title": "10x multiome",
171            "status": "preview",
172            "summary": "single-nucleus ATAC-seq (10x multiome)"
173        },
174        {
175            "@id": "/measurement-sets/IGVFDS9798CNRQ/",
176            "accession": "IGVFDS9798CNRQ",
177            "aliases": [
178                "igvf:corces_measurementSet_X034_G5_RNA"
179            ],
180            "file_set_type": "experimental data",
181            "lab": {
182                "title": "Ryan Corces, Gladstone Institute UCSF"
183            },
184            "preferred_assay_title": "10x multiome",
185            "status": "preview",
186            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
187        },
188        {
189            "@id": "/measurement-sets/IGVFDS0657ZCIG/",
190            "accession": "IGVFDS0657ZCIG",
191            "aliases": [
192                "igvf:corces_measurementSet_X034_G4_ATAC"
193            ],
194            "file_set_type": "experimental data",
195            "lab": {
196                "title": "Ryan Corces, Gladstone Institute UCSF"
197            },
198            "preferred_assay_title": "10x multiome",
199            "status": "preview",
200            "summary": "single-nucleus ATAC-seq (10x multiome)"
201        },
202        {
203            "@id": "/measurement-sets/IGVFDS7774XGTW/",
204            "accession": "IGVFDS7774XGTW",
205            "aliases": [
206                "igvf:corces_measurementSet_X034_G4_RNA"
207            ],
208            "file_set_type": "experimental data",
209            "lab": {
210                "title": "Ryan Corces, Gladstone Institute UCSF"
211            },
212            "preferred_assay_title": "10x multiome",
213            "status": "preview",
214            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
215        },
216        {
217            "@id": "/measurement-sets/IGVFDS9154RLYN/",
218            "accession": "IGVFDS9154RLYN",
219            "aliases": [
220                "igvf:corces_measurementSet_X034_G6_ATAC"
221            ],
222            "file_set_type": "experimental data",
223            "lab": {
224                "title": "Ryan Corces, Gladstone Institute UCSF"
225            },
226            "preferred_assay_title": "10x multiome",
227            "status": "preview",
228            "summary": "single-nucleus ATAC-seq (10x multiome)"
229        },
230        {
231            "@id": "/measurement-sets/IGVFDS5345ASRP/",
232            "accession": "IGVFDS5345ASRP",
233            "aliases": [
234                "igvf:corces_measurementSet_X034_G6_RNA"
235            ],
236            "file_set_type": "experimental data",
237            "lab": {
238                "title": "Ryan Corces, Gladstone Institute UCSF"
239            },
240            "preferred_assay_title": "10x multiome",
241            "status": "preview",
242            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
243        },
244        {
245            "@id": "/measurement-sets/IGVFDS7554VLPG/",
246            "accession": "IGVFDS7554VLPG",
247            "aliases": [
248                "igvf:corces_measurementSet_X034_G8_ATAC"
249            ],
250            "file_set_type": "experimental data",
251            "lab": {
252                "title": "Ryan Corces, Gladstone Institute UCSF"
253            },
254            "preferred_assay_title": "10x multiome",
255            "status": "preview",
256            "summary": "single-nucleus ATAC-seq (10x multiome)"
257        },
258        {
259            "@id": "/measurement-sets/IGVFDS1961RTGX/",
260            "accession": "IGVFDS1961RTGX",
261            "aliases": [
262                "igvf:corces_measurementSet_X034_G8_RNA"
263            ],
264            "file_set_type": "experimental data",
265            "lab": {
266                "title": "Ryan Corces, Gladstone Institute UCSF"
267            },
268            "preferred_assay_title": "10x multiome",
269            "status": "preview",
270            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
271        },
272        {
273            "@id": "/measurement-sets/IGVFDS0911QBRM/",
274            "accession": "IGVFDS0911QBRM",
275            "aliases": [
276                "igvf:corces_measurementSet_RP024_G2_ATAC"
277            ],
278            "file_set_type": "experimental data",
279            "lab": {
280                "title": "Ryan Corces, Gladstone Institute UCSF"
281            },
282            "preferred_assay_title": "10x multiome",
283            "status": "preview",
284            "summary": "single-nucleus ATAC-seq (10x multiome)"
285        },
286        {
287            "@id": "/measurement-sets/IGVFDS6965XCFR/",
288            "accession": "IGVFDS6965XCFR",
289            "aliases": [
290                "igvf:corces_measurementSet_RP024_G2_RNA"
291            ],
292            "file_set_type": "experimental data",
293            "lab": {
294                "title": "Ryan Corces, Gladstone Institute UCSF"
295            },
296            "preferred_assay_title": "10x multiome",
297            "status": "preview",
298            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
299        },
300        {
301            "@id": "/measurement-sets/IGVFDS2903IZSU/",
302            "accession": "IGVFDS2903IZSU",
303            "aliases": [
304                "igvf:corces_measurementSet_RP024_G1_ATAC"
305            ],
306            "file_set_type": "experimental data",
307            "lab": {
308                "title": "Ryan Corces, Gladstone Institute UCSF"
309            },
310            "preferred_assay_title": "10x multiome",
311            "status": "preview",
312            "summary": "single-nucleus ATAC-seq (10x multiome)"
313        },
314        {
315            "@id": "/measurement-sets/IGVFDS7104BYEI/",
316            "accession": "IGVFDS7104BYEI",
317            "aliases": [
318                "igvf:corces_measurementSet_RP024_G1_RNA"
319            ],
320            "file_set_type": "experimental data",
321            "lab": {
322                "title": "Ryan Corces, Gladstone Institute UCSF"
323            },
324            "preferred_assay_title": "10x multiome",
325            "status": "preview",
326            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
327        },
328        {
329            "@id": "/measurement-sets/IGVFDS6834GIYR/",
330            "accession": "IGVFDS6834GIYR",
331            "aliases": [
332                "igvf:corces_measurementSet_RP024_G3_ATAC"
333            ],
334            "file_set_type": "experimental data",
335            "lab": {
336                "title": "Ryan Corces, Gladstone Institute UCSF"
337            },
338            "preferred_assay_title": "10x multiome",
339            "status": "preview",
340            "summary": "single-nucleus ATAC-seq (10x multiome)"
341        },
342        {
343            "@id": "/measurement-sets/IGVFDS8079TJID/",
344            "accession": "IGVFDS8079TJID",
345            "aliases": [
346                "igvf:corces_measurementSet_RP024_G3_RNA"
347            ],
348            "file_set_type": "experimental data",
349            "lab": {
350                "title": "Ryan Corces, Gladstone Institute UCSF"
351            },
352            "preferred_assay_title": "10x multiome",
353            "status": "preview",
354            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
355        },
356        {
357            "@id": "/measurement-sets/IGVFDS7629BTQC/",
358            "accession": "IGVFDS7629BTQC",
359            "aliases": [
360                "igvf:corces_measurementSet_RP024_G4_ATAC"
361            ],
362            "file_set_type": "experimental data",
363            "lab": {
364                "title": "Ryan Corces, Gladstone Institute UCSF"
365            },
366            "preferred_assay_title": "10x multiome",
367            "status": "preview",
368            "summary": "single-nucleus ATAC-seq (10x multiome)"
369        },
370        {
371            "@id": "/measurement-sets/IGVFDS6835ATJK/",
372            "accession": "IGVFDS6835ATJK",
373            "aliases": [
374                "igvf:corces_measurementSet_RP024_G4_RNA"
375            ],
376            "file_set_type": "experimental data",
377            "lab": {
378                "title": "Ryan Corces, Gladstone Institute UCSF"
379            },
380            "preferred_assay_title": "10x multiome",
381            "status": "preview",
382            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
383        }
384    ],
385    "institutional_certificates": [
386        {
387            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
388            "certificate_identifier": "IP115-05",
389            "controlled_access": false,
390            "status": "in progress"
391        }
392    ],
393    "lab": {
394        "@id": "/labs/ryan-corces/",
395        "title": "Ryan Corces, Gladstone Institute UCSF"
396    },
397    "lower_bound_age": 93,
398    "lower_bound_age_in_hours": 814680,
399    "multiplexed_in": [
400        {
401            "@id": "/multiplexed-samples/IGVFSM8142OKXB/",
402            "accession": "IGVFSM8142OKXB",
403            "status": "preview"
404        },
405        {
406            "@id": "/multiplexed-samples/IGVFSM1324BFCG/",
407            "accession": "IGVFSM1324BFCG",
408            "status": "preview"
409        },
410        {
411            "@id": "/multiplexed-samples/IGVFSM3181SBTD/",
412            "accession": "IGVFSM3181SBTD",
413            "status": "preview"
414        },
415        {
416            "@id": "/multiplexed-samples/IGVFSM4523IFJQ/",
417            "accession": "IGVFSM4523IFJQ",
418            "status": "preview"
419        },
420        {
421            "@id": "/multiplexed-samples/IGVFSM5148GBXN/",
422            "accession": "IGVFSM5148GBXN",
423            "status": "preview"
424        },
425        {
426            "@id": "/multiplexed-samples/IGVFSM6584SYBT/",
427            "accession": "IGVFSM6584SYBT",
428            "status": "preview"
429        },
430        {
431            "@id": "/multiplexed-samples/IGVFSM3252XAWB/",
432            "accession": "IGVFSM3252XAWB",
433            "status": "preview"
434        },
435        {
436            "@id": "/multiplexed-samples/IGVFSM1906OZPR/",
437            "accession": "IGVFSM1906OZPR",
438            "status": "preview"
439        },
440        {
441            "@id": "/multiplexed-samples/IGVFSM3515JFEY/",
442            "accession": "IGVFSM3515JFEY",
443            "status": "preview"
444        },
445        {
446            "@id": "/multiplexed-samples/IGVFSM2596KVVR/",
447            "accession": "IGVFSM2596KVVR",
448            "status": "preview"
449        },
450        {
451            "@id": "/multiplexed-samples/IGVFSM2219CEMB/",
452            "accession": "IGVFSM2219CEMB",
453            "status": "preview"
454        },
455        {
456            "@id": "/multiplexed-samples/IGVFSM4734YTAT/",
457            "accession": "IGVFSM4734YTAT",
458            "status": "preview"
459        }
460    ],
461    "origin_of": [],
462    "parts": [],
463    "pmi": 180,
464    "pmi_units": "minute",
465    "pooled_in": [],
466    "preservation_method": "flash-freezing",
467    "protocols": [
468        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
469    ],
470    "sample_terms": [
471        {
472            "@id": "/sample-terms/UBERON_0001874/",
473            "status": "preview",
474            "term_name": "putamen"
475        }
476    ],
477    "schema_version": "21",
478    "sex": "male",
479    "sorted_fractions": [],
480    "sources": [
481        {
482            "@id": "/sources/banner-health/",
483            "status": "released",
484            "title": "Banner Health"
485        }
486    ],
487    "status": "preview",
488    "submitted_by": {
489        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
490        "title": "Ryan Corces"
491    },
492    "summary": "Homo sapiens (male, 93 years) putamen tissue",
493    "taxa": "Homo sapiens",
494    "upper_bound_age": 93,
495    "upper_bound_age_in_hours": 814680,
496    "uuid": "da04fa94-d8ba-4868-8509-f15028ff7115",
497    "virtual": false
498}