middle temporal gyrus — IGVFSM5405WTGW

preview
1{
2    "@context": "/terms/",
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4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
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11    "age": "78",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN0325_MTG_B1"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM5405WTGW](/tissues/IGVFSM5405WTGW/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM5405WTGW/"
25            },
26            {
27                "category": "missing CCF ID",
28                "detail": "Tissue [IGVFSM5405WTGW](/tissues/IGVFSM5405WTGW/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_tissue_ccf_id",
32                "path": "/tissues/IGVFSM5405WTGW/"
33            }
34        ]
35    },
36    "award": {
37        "@id": "/awards/HG012076/",
38        "component": "mapping"
39    },
40    "classifications": [
41        "tissue"
42    ],
43    "creation_timestamp": "2025-03-19T13:00:20.184610+00:00",
44    "date_obtained": "2023-04-25",
45    "disease_terms": [
46        {
47            "@id": "/phenotype-terms/DOID_14330/",
48            "status": "in progress",
49            "term_name": "Parkinson's disease"
50        }
51    ],
52    "donors": [
53        {
54            "@id": "/human-donors/IGVFDO4108VCBA/",
55            "accession": "IGVFDO4108VCBA",
56            "ethnicities": [
57                "European"
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59            "status": "preview"
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68            ],
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70            "lab": {
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72            },
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74            "status": "preview",
75            "summary": "single-nucleus ATAC-seq (10x multiome)"
76        },
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88            "status": "preview",
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126            "lab": {
127                "title": "Ryan Corces, Gladstone Institute UCSF"
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130            "status": "preview",
131            "summary": "single-nucleus ATAC-seq (10x multiome)"
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141                "title": "Ryan Corces, Gladstone Institute UCSF"
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169                "title": "Ryan Corces, Gladstone Institute UCSF"
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171            "preferred_assay_title": "10x multiome",
172            "status": "preview",
173            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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183                "title": "Ryan Corces, Gladstone Institute UCSF"
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229            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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239                "title": "Ryan Corces, Gladstone Institute UCSF"
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243            "summary": "single-nucleus ATAC-seq (10x multiome)"
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253                "title": "Ryan Corces, Gladstone Institute UCSF"
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267                "title": "Ryan Corces, Gladstone Institute UCSF"
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288    "institutional_certificates": [
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298        "title": "Ryan Corces, Gladstone Institute UCSF"
299    },
300    "lower_bound_age": 78,
301    "lower_bound_age_in_hours": 683280,
302    "multiplexed_in": [
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336            "status": "preview"
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343    ],
344    "origin_of": [],
345    "part_of": "/tissues/IGVFSM9419YCHL/",
346    "parts": [],
347    "pmi": 150,
348    "pmi_units": "minute",
349    "pooled_in": [],
350    "preservation_method": "flash-freezing",
351    "protocols": [
352        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
353    ],
354    "sample_terms": [
355        {
356            "@id": "/sample-terms/UBERON_0002771/",
357            "status": "preview",
358            "term_name": "middle temporal gyrus"
359        }
360    ],
361    "schema_version": "21",
362    "sex": "male",
363    "sorted_fractions": [],
364    "sources": [
365        {
366            "@id": "/sources/banner-health/",
367            "status": "released",
368            "title": "Banner Health"
369        }
370    ],
371    "status": "preview",
372    "submitted_by": {
373        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
374        "title": "Ryan Corces"
375    },
376    "summary": "Homo sapiens (male, 78 years) middle temporal gyrus tissue associated with Parkinson's disease",
377    "taxa": "Homo sapiens",
378    "upper_bound_age": 78,
379    "upper_bound_age_in_hours": 683280,
380    "uuid": "2b64097a-9e88-43f6-a931-31754bba24aa",
381    "virtual": false
382}