middle temporal gyrus — IGVFSM5392ACSB

preview
1{
2    "@context": "/terms/",
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4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
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11    "age": "73",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1235_MTG"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM5392ACSB](/tissues/IGVFSM5392ACSB/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM5392ACSB/"
25            },
26            {
27                "category": "mismatched status",
28                "detail": "Preview tissue [IGVFSM5392ACSB](/tissues/IGVFSM5392ACSB/) has in progress subobject phenotype term [DOID_0080832](/phenotype-terms/DOID_0080832/).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_item_status",
32                "path": "/tissues/IGVFSM5392ACSB/"
33            },
34            {
35                "category": "missing CCF ID",
36                "detail": "Tissue [IGVFSM5392ACSB](/tissues/IGVFSM5392ACSB/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
37                "level": 30,
38                "level_name": "INTERNAL_ACTION",
39                "name": "audit_tissue_ccf_id",
40                "path": "/tissues/IGVFSM5392ACSB/"
41            }
42        ]
43    },
44    "award": {
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46        "component": "mapping"
47    },
48    "classifications": [
49        "tissue"
50    ],
51    "creation_timestamp": "2025-03-19T04:10:15.710963+00:00",
52    "date_obtained": "2022-11-29",
53    "disease_terms": [
54        {
55            "@id": "/phenotype-terms/DOID_14330/",
56            "status": "in progress",
57            "term_name": "Parkinson's disease"
58        },
59        {
60            "@id": "/phenotype-terms/DOID_0080832/",
61            "status": "in progress",
62            "term_name": "mild cognitive impairment"
63        }
64    ],
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224                "title": "Ryan Corces, Gladstone Institute UCSF"
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237            "lab": {
238                "title": "Ryan Corces, Gladstone Institute UCSF"
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252                "title": "Ryan Corces, Gladstone Institute UCSF"
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308                "title": "Ryan Corces, Gladstone Institute UCSF"
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322                "title": "Ryan Corces, Gladstone Institute UCSF"
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326            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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336                "title": "Ryan Corces, Gladstone Institute UCSF"
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340            "summary": "single-nucleus ATAC-seq (10x multiome)"
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350                "title": "Ryan Corces, Gladstone Institute UCSF"
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364                "title": "Ryan Corces, Gladstone Institute UCSF"
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564            "summary": "single-nucleus ATAC-seq (10x multiome)"
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591            "status": "preview",
592            "summary": "single-nucleus ATAC-seq (10x multiome)"
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606            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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620            "summary": "single-nucleus ATAC-seq (10x multiome)"
621        },
622        {
623            "@id": "/measurement-sets/IGVFDS9238GAGW/",
624            "accession": "IGVFDS9238GAGW",
625            "aliases": [
626                "igvf:corces_measurementSet_RP027_G6_RNA"
627            ],
628            "file_set_type": "experimental data",
629            "lab": {
630                "title": "Ryan Corces, Gladstone Institute UCSF"
631            },
632            "preferred_assay_title": "10x multiome",
633            "status": "preview",
634            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
635        },
636        {
637            "@id": "/measurement-sets/IGVFDS5840XDFA/",
638            "accession": "IGVFDS5840XDFA",
639            "aliases": [
640                "igvf:corces_measurementSet_RP027_G1_ATAC"
641            ],
642            "file_set_type": "experimental data",
643            "lab": {
644                "title": "Ryan Corces, Gladstone Institute UCSF"
645            },
646            "preferred_assay_title": "10x multiome",
647            "status": "preview",
648            "summary": "single-nucleus ATAC-seq (10x multiome)"
649        },
650        {
651            "@id": "/measurement-sets/IGVFDS6755WRHO/",
652            "accession": "IGVFDS6755WRHO",
653            "aliases": [
654                "igvf:corces_measurementSet_RP027_G1_RNA"
655            ],
656            "file_set_type": "experimental data",
657            "lab": {
658                "title": "Ryan Corces, Gladstone Institute UCSF"
659            },
660            "preferred_assay_title": "10x multiome",
661            "status": "preview",
662            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
663        },
664        {
665            "@id": "/measurement-sets/IGVFDS0324WVBM/",
666            "accession": "IGVFDS0324WVBM",
667            "aliases": [
668                "igvf:corces_measurementSet_RP027_G8_ATAC"
669            ],
670            "file_set_type": "experimental data",
671            "lab": {
672                "title": "Ryan Corces, Gladstone Institute UCSF"
673            },
674            "preferred_assay_title": "10x multiome",
675            "status": "preview",
676            "summary": "single-nucleus ATAC-seq (10x multiome)"
677        },
678        {
679            "@id": "/measurement-sets/IGVFDS9985YUZH/",
680            "accession": "IGVFDS9985YUZH",
681            "aliases": [
682                "igvf:corces_measurementSet_RP027_G8_RNA"
683            ],
684            "file_set_type": "experimental data",
685            "lab": {
686                "title": "Ryan Corces, Gladstone Institute UCSF"
687            },
688            "preferred_assay_title": "10x multiome",
689            "status": "preview",
690            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
691        }
692    ],
693    "institutional_certificates": [
694        {
695            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
696            "certificate_identifier": "IP115-05",
697            "controlled_access": false,
698            "status": "in progress"
699        }
700    ],
701    "lab": {
702        "@id": "/labs/ryan-corces/",
703        "title": "Ryan Corces, Gladstone Institute UCSF"
704    },
705    "lower_bound_age": 73,
706    "lower_bound_age_in_hours": 639480,
707    "multiplexed_in": [
708        {
709            "@id": "/multiplexed-samples/IGVFSM0227NNUH/",
710            "accession": "IGVFSM0227NNUH",
711            "status": "preview"
712        },
713        {
714            "@id": "/multiplexed-samples/IGVFSM7862ZFRE/",
715            "accession": "IGVFSM7862ZFRE",
716            "status": "preview"
717        },
718        {
719            "@id": "/multiplexed-samples/IGVFSM0150MSRW/",
720            "accession": "IGVFSM0150MSRW",
721            "status": "preview"
722        },
723        {
724            "@id": "/multiplexed-samples/IGVFSM2056FRDV/",
725            "accession": "IGVFSM2056FRDV",
726            "status": "preview"
727        },
728        {
729            "@id": "/multiplexed-samples/IGVFSM0003YDGL/",
730            "accession": "IGVFSM0003YDGL",
731            "status": "preview"
732        },
733        {
734            "@id": "/multiplexed-samples/IGVFSM5256WGBP/",
735            "accession": "IGVFSM5256WGBP",
736            "status": "preview"
737        },
738        {
739            "@id": "/multiplexed-samples/IGVFSM3682UJBY/",
740            "accession": "IGVFSM3682UJBY",
741            "status": "preview"
742        },
743        {
744            "@id": "/multiplexed-samples/IGVFSM1370NRUL/",
745            "accession": "IGVFSM1370NRUL",
746            "status": "preview"
747        },
748        {
749            "@id": "/multiplexed-samples/IGVFSM3143GHVU/",
750            "accession": "IGVFSM3143GHVU",
751            "status": "preview"
752        },
753        {
754            "@id": "/multiplexed-samples/IGVFSM8275JZCV/",
755            "accession": "IGVFSM8275JZCV",
756            "status": "preview"
757        },
758        {
759            "@id": "/multiplexed-samples/IGVFSM5603MWWM/",
760            "accession": "IGVFSM5603MWWM",
761            "status": "preview"
762        },
763        {
764            "@id": "/multiplexed-samples/IGVFSM9675WPZF/",
765            "accession": "IGVFSM9675WPZF",
766            "status": "preview"
767        },
768        {
769            "@id": "/multiplexed-samples/IGVFSM1416OTQT/",
770            "accession": "IGVFSM1416OTQT",
771            "status": "preview"
772        },
773        {
774            "@id": "/multiplexed-samples/IGVFSM7204JWYU/",
775            "accession": "IGVFSM7204JWYU",
776            "status": "preview"
777        },
778        {
779            "@id": "/multiplexed-samples/IGVFSM9924QRZP/",
780            "accession": "IGVFSM9924QRZP",
781            "status": "preview"
782        },
783        {
784            "@id": "/multiplexed-samples/IGVFSM7137MKTX/",
785            "accession": "IGVFSM7137MKTX",
786            "status": "preview"
787        },
788        {
789            "@id": "/multiplexed-samples/IGVFSM4716JFLW/",
790            "accession": "IGVFSM4716JFLW",
791            "status": "preview"
792        },
793        {
794            "@id": "/multiplexed-samples/IGVFSM0275PBUR/",
795            "accession": "IGVFSM0275PBUR",
796            "status": "preview"
797        },
798        {
799            "@id": "/multiplexed-samples/IGVFSM7865MTXP/",
800            "accession": "IGVFSM7865MTXP",
801            "status": "preview"
802        },
803        {
804            "@id": "/multiplexed-samples/IGVFSM7247VDCH/",
805            "accession": "IGVFSM7247VDCH",
806            "status": "preview"
807        },
808        {
809            "@id": "/multiplexed-samples/IGVFSM1803KRCW/",
810            "accession": "IGVFSM1803KRCW",
811            "status": "preview"
812        },
813        {
814            "@id": "/multiplexed-samples/IGVFSM5733CUKP/",
815            "accession": "IGVFSM5733CUKP",
816            "status": "preview"
817        }
818    ],
819    "origin_of": [],
820    "parts": [],
821    "pmi": 480,
822    "pmi_units": "minute",
823    "pooled_in": [],
824    "preservation_method": "flash-freezing",
825    "protocols": [
826        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
827    ],
828    "sample_terms": [
829        {
830            "@id": "/sample-terms/UBERON_0002771/",
831            "status": "preview",
832            "term_name": "middle temporal gyrus"
833        }
834    ],
835    "schema_version": "21",
836    "sex": "male",
837    "sorted_fractions": [],
838    "sources": [
839        {
840            "@id": "/sources/banner-health/",
841            "status": "released",
842            "title": "Banner Health"
843        }
844    ],
845    "status": "preview",
846    "submitted_by": {
847        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
848        "title": "Ryan Corces"
849    },
850    "summary": "Homo sapiens (male, 73 years) middle temporal gyrus tissue associated with Parkinson's disease, mild cognitive impairment",
851    "taxa": "Homo sapiens",
852    "upper_bound_age": 73,
853    "upper_bound_age_in_hours": 639480,
854    "uuid": "cacbfcea-0e02-4845-aa80-0f9674a13c02",
855    "virtual": false
856}