left cerebral cortex — IGVFSM5157GFSA

released
1{
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4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM5157GFSA",
11    "age": "72",
12    "age_units": "day",
13    "aliases": [
14        "ali-mortazavi:107_CASTJ_10M_21_NTR_0000646"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing publication",
20                "detail": "Tissue [IGVFSM5157GFSA](/tissues/IGVFSM5157GFSA/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_sample_missing_publication",
24                "path": "/tissues/IGVFSM5157GFSA/"
25            },
26            {
27                "category": "NTR term ID",
28                "detail": "Sample term for [NTR_0000646](/sample-terms/NTR_0000646/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_ntr_term_id",
32                "path": "/sample-terms/NTR_0000646/"
33            }
34        ]
35    },
36    "award": {
37        "@id": "/awards/HG012077/",
38        "component": "mapping"
39    },
40    "classifications": [
41        "tissue"
42    ],
43    "creation_timestamp": "2023-08-25T17:24:25.678028+00:00",
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46            "@id": "/rodent-donors/IGVFDO4816HOFW/",
47            "accession": "IGVFDO4816HOFW",
48            "status": "released",
49            "strain": "CAST/EiJ"
50        }
51    ],
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60            "lab": {
61                "title": "Ali Mortazavi, UCI"
62            },
63            "preferred_assay_title": "Parse SPLiT-seq",
64            "status": "released",
65            "summary": "Parse SPLiT-seq"
66        },
67        {
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71            "lab": {
72                "title": "Ali Mortazavi, UCI"
73            },
74            "status": "released",
75            "summary": "Mus musculus barcodes"
76        },
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88            "summary": "Parse SPLiT-seq: sparse gene count matrix"
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98            "summary": "Parse SPLiT-seq"
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105                "title": "Ali Mortazavi, UCI"
106            },
107            "status": "in progress",
108            "summary": "Parse SPLiT-seq"
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118                "title": "Ali Mortazavi, UCI"
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121            "summary": "Parse SPLiT-seq"
122        },
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125            "accession": "IGVFDS4883TFKC",
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128            ],
129            "file_set_type": "principal analysis",
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131                "title": "Ali Mortazavi, UCI"
132            },
133            "status": "released",
134            "summary": "Parse SPLiT-seq: sparse gene count matrix"
135        },
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144                "title": "Ali Mortazavi, UCI"
145            },
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147            "summary": "Parse SPLiT-seq"
148        },
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156            "lab": {
157                "title": "Ali Mortazavi, UCI"
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161            "summary": "Parse SPLiT-seq"
162        },
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168            ],
169            "file_set_type": "intermediate analysis",
170            "lab": {
171                "title": "Ali Mortazavi, UCI"
172            },
173            "status": "released",
174            "summary": "Parse SPLiT-seq: sparse gene count matrix"
175        },
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178            "accession": "IGVFDS2416XAHE",
179            "file_set_type": "intermediate analysis",
180            "lab": {
181                "title": "Ali Mortazavi, UCI"
182            },
183            "status": "in progress",
184            "summary": "Parse SPLiT-seq"
185        },
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188            "accession": "IGVFDS5167UVTO",
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194                "title": "Ali Mortazavi, UCI"
195            },
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197            "summary": "Parse SPLiT-seq"
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206            "lab": {
207                "title": "Ali Mortazavi, UCI"
208            },
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210            "status": "released",
211            "summary": "Parse SPLiT-seq"
212        },
213        {
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217                "ali-mortazavi:IGVF_B01_subpool_3"
218            ],
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220            "lab": {
221                "title": "Ali Mortazavi, UCI"
222            },
223            "status": "released",
224            "summary": "Parse SPLiT-seq: sparse gene count matrix"
225        },
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228            "accession": "IGVFDS3564UUZB",
229            "file_set_type": "intermediate analysis",
230            "lab": {
231                "title": "Ali Mortazavi, UCI"
232            },
233            "status": "in progress",
234            "summary": "Parse SPLiT-seq"
235        },
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238            "accession": "IGVFDS1886FEBC",
239            "aliases": [
240                "ali-mortazavi:B01_13C_illumina_scpipeline_counts"
241            ],
242            "file_set_type": "intermediate analysis",
243            "lab": {
244                "title": "Ali Mortazavi, UCI"
245            },
246            "status": "in progress",
247            "summary": "Parse SPLiT-seq"
248        },
249        {
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254            ],
255            "file_set_type": "experimental data",
256            "lab": {
257                "title": "Ali Mortazavi, UCI"
258            },
259            "preferred_assay_title": "Parse SPLiT-seq",
260            "status": "released",
261            "summary": "Parse SPLiT-seq"
262        },
263        {
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268            ],
269            "file_set_type": "intermediate analysis",
270            "lab": {
271                "title": "Ali Mortazavi, UCI"
272            },
273            "status": "released",
274            "summary": "Parse SPLiT-seq: sparse gene count matrix"
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279            "file_set_type": "intermediate analysis",
280            "lab": {
281                "title": "Ali Mortazavi, UCI"
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283            "status": "in progress",
284            "summary": "Parse SPLiT-seq"
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294                "title": "Ali Mortazavi, UCI"
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296            "status": "in progress",
297            "summary": "Parse SPLiT-seq"
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306            "lab": {
307                "title": "Ali Mortazavi, UCI"
308            },
309            "preferred_assay_title": "Parse SPLiT-seq",
310            "status": "released",
311            "summary": "Parse SPLiT-seq"
312        },
313        {
314            "@id": "/analysis-sets/IGVFDS3636WTST/",
315            "accession": "IGVFDS3636WTST",
316            "aliases": [
317                "ali-mortazavi:IGVF_B01_subpool_6"
318            ],
319            "file_set_type": "intermediate analysis",
320            "lab": {
321                "title": "Ali Mortazavi, UCI"
322            },
323            "status": "released",
324            "summary": "Parse SPLiT-seq: sparse gene count matrix"
325        },
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329            "file_set_type": "intermediate analysis",
330            "lab": {
331                "title": "Ali Mortazavi, UCI"
332            },
333            "status": "in progress",
334            "summary": "Parse SPLiT-seq"
335        },
336        {
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338            "accession": "IGVFDS5045HMBV",
339            "aliases": [
340                "ali-mortazavi:B01_13F_illumina_scpipeline_counts"
341            ],
342            "file_set_type": "intermediate analysis",
343            "lab": {
344                "title": "Ali Mortazavi, UCI"
345            },
346            "status": "in progress",
347            "summary": "Parse SPLiT-seq"
348        },
349        {
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351            "accession": "IGVFDS9522BMQK",
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353                "ali-mortazavi:B01_13G_illumina"
354            ],
355            "file_set_type": "experimental data",
356            "lab": {
357                "title": "Ali Mortazavi, UCI"
358            },
359            "preferred_assay_title": "Parse SPLiT-seq",
360            "status": "released",
361            "summary": "Parse SPLiT-seq"
362        },
363        {
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370            "lab": {
371                "title": "Ali Mortazavi, UCI"
372            },
373            "preferred_assay_title": "Parse SPLiT-seq",
374            "status": "released",
375            "summary": "Parse SPLiT-seq"
376        },
377        {
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382            ],
383            "file_set_type": "intermediate analysis",
384            "lab": {
385                "title": "Ali Mortazavi, UCI"
386            },
387            "status": "released",
388            "summary": "Parse SPLiT-seq: sparse gene count matrix"
389        },
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393            "file_set_type": "intermediate analysis",
394            "lab": {
395                "title": "Ali Mortazavi, UCI"
396            },
397            "status": "in progress",
398            "summary": "Parse SPLiT-seq"
399        },
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402            "accession": "IGVFDS1377KBXL",
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408                "title": "Ali Mortazavi, UCI"
409            },
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411            "summary": "Parse SPLiT-seq: sparse gene count matrix"
412        },
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421                "title": "Ali Mortazavi, UCI"
422            },
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424            "summary": "Parse SPLiT-seq: sparse gene count matrix"
425        },
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432            "file_set_type": "principal analysis",
433            "lab": {
434                "title": "Ali Mortazavi, UCI"
435            },
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437            "summary": "Parse SPLiT-seq: sparse gene count matrix"
438        },
439        {
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445            "file_set_type": "principal analysis",
446            "lab": {
447                "title": "Ali Mortazavi, UCI"
448            },
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450            "summary": "Parse SPLiT-seq: transcript quantifications"
451        },
452        {
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458            "file_set_type": "principal analysis",
459            "lab": {
460                "title": "Ali Mortazavi, UCI"
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463            "summary": "Parse SPLiT-seq: transcript quantifications"
464        },
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472            "lab": {
473                "title": "Ali Mortazavi, UCI"
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475            "status": "in progress",
476            "summary": "Parse SPLiT-seq"
477        },
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484            "file_set_type": "principal analysis",
485            "lab": {
486                "title": "Ali Mortazavi, UCI"
487            },
488            "status": "in progress",
489            "summary": "Parse SPLiT-seq: sparse gene count matrix"
490        },
491        {
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493            "accession": "IGVFDS7467TPQO",
494            "aliases": [
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497            "file_set_type": "principal analysis",
498            "lab": {
499                "title": "Ali Mortazavi, UCI"
500            },
501            "status": "in progress",
502            "summary": "Parse SPLiT-seq: sparse gene count matrix"
503        },
504        {
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508                "ali-mortazavi:b01_nanopore_13G_bulk_k63_casteij"
509            ],
510            "file_set_type": "principal analysis",
511            "lab": {
512                "title": "Ali Mortazavi, UCI"
513            },
514            "status": "in progress",
515            "summary": "Parse SPLiT-seq: transcript quantifications"
516        },
517        {
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521                "ali-mortazavi:b01_nanopore_13G_bulk_k63_mm39"
522            ],
523            "file_set_type": "principal analysis",
524            "lab": {
525                "title": "Ali Mortazavi, UCI"
526            },
527            "status": "in progress",
528            "summary": "Parse SPLiT-seq: transcript quantifications"
529        },
530        {
531            "@id": "/analysis-sets/IGVFDS3821ZEWS/",
532            "accession": "IGVFDS3821ZEWS",
533            "aliases": [
534                "ali-mortazavi:b01_nanopore_13G_single_cell_k63_randO_mm39"
535            ],
536            "file_set_type": "principal analysis",
537            "lab": {
538                "title": "Ali Mortazavi, UCI"
539            },
540            "status": "in progress",
541            "summary": "Parse SPLiT-seq: sparse gene count matrix"
542        },
543        {
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550            "lab": {
551                "title": "Ali Mortazavi, UCI"
552            },
553            "preferred_assay_title": "Parse SPLiT-seq",
554            "status": "released",
555            "summary": "Parse SPLiT-seq"
556        },
557        {
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559            "accession": "IGVFDS2762DTQI",
560            "aliases": [
561                "ali-mortazavi:IGVF_B01_subpool_5"
562            ],
563            "file_set_type": "intermediate analysis",
564            "lab": {
565                "title": "Ali Mortazavi, UCI"
566            },
567            "status": "released",
568            "summary": "Parse SPLiT-seq: sparse gene count matrix"
569        },
570        {
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572            "accession": "IGVFDS2510GFKI",
573            "file_set_type": "intermediate analysis",
574            "lab": {
575                "title": "Ali Mortazavi, UCI"
576            },
577            "status": "in progress",
578            "summary": "Parse SPLiT-seq"
579        },
580        {
581            "@id": "/analysis-sets/IGVFDS0999ZICM/",
582            "accession": "IGVFDS0999ZICM",
583            "aliases": [
584                "ali-mortazavi:B01_13E_illumina_scpipeline_counts"
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586            "file_set_type": "intermediate analysis",
587            "lab": {
588                "title": "Ali Mortazavi, UCI"
589            },
590            "status": "in progress",
591            "summary": "Parse SPLiT-seq"
592        },
593        {
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600            "lab": {
601                "title": "Ali Mortazavi, UCI"
602            },
603            "preferred_assay_title": "Parse SPLiT-seq",
604            "status": "released",
605            "summary": "Parse SPLiT-seq"
606        },
607        {
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609            "accession": "IGVFDS9445YYVB",
610            "aliases": [
611                "ali-mortazavi:B01_13H_nanopore"
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613            "file_set_type": "experimental data",
614            "lab": {
615                "title": "Ali Mortazavi, UCI"
616            },
617            "preferred_assay_title": "Parse SPLiT-seq",
618            "status": "released",
619            "summary": "Parse SPLiT-seq"
620        },
621        {
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623            "accession": "IGVFDS8648GJCE",
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626            ],
627            "file_set_type": "intermediate analysis",
628            "lab": {
629                "title": "Ali Mortazavi, UCI"
630            },
631            "status": "released",
632            "summary": "Parse SPLiT-seq: sparse gene count matrix"
633        },
634        {
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636            "accession": "IGVFDS3856IZVF",
637            "file_set_type": "intermediate analysis",
638            "lab": {
639                "title": "Ali Mortazavi, UCI"
640            },
641            "status": "in progress",
642            "summary": "Parse SPLiT-seq"
643        },
644        {
645            "@id": "/analysis-sets/IGVFDS0231GDWH/",
646            "accession": "IGVFDS0231GDWH",
647            "aliases": [
648                "ali-mortazavi:b01_next1_13H_bulk_k31_casteij"
649            ],
650            "file_set_type": "principal analysis",
651            "lab": {
652                "title": "Ali Mortazavi, UCI"
653            },
654            "status": "in progress",
655            "summary": "Parse SPLiT-seq: transcript quantifications"
656        },
657        {
658            "@id": "/analysis-sets/IGVFDS1622ABWA/",
659            "accession": "IGVFDS1622ABWA",
660            "aliases": [
661                "ali-mortazavi:b01_next1_13H_bulk_k31_mm39"
662            ],
663            "file_set_type": "principal analysis",
664            "lab": {
665                "title": "Ali Mortazavi, UCI"
666            },
667            "status": "in progress",
668            "summary": "Parse SPLiT-seq: transcript quantifications"
669        },
670        {
671            "@id": "/analysis-sets/IGVFDS5946BBUS/",
672            "accession": "IGVFDS5946BBUS",
673            "aliases": [
674                "ali-mortazavi:B01_13H_illumina_scpipeline_counts"
675            ],
676            "file_set_type": "intermediate analysis",
677            "lab": {
678                "title": "Ali Mortazavi, UCI"
679            },
680            "status": "in progress",
681            "summary": "Parse SPLiT-seq"
682        },
683        {
684            "@id": "/analysis-sets/IGVFDS3833XYEY/",
685            "accession": "IGVFDS3833XYEY",
686            "aliases": [
687                "ali-mortazavi:b01_nanopore_13H_bulk_k63_casteij"
688            ],
689            "file_set_type": "principal analysis",
690            "lab": {
691                "title": "Ali Mortazavi, UCI"
692            },
693            "status": "in progress",
694            "summary": "Parse SPLiT-seq: transcript quantifications"
695        },
696        {
697            "@id": "/analysis-sets/IGVFDS5673HQEN/",
698            "accession": "IGVFDS5673HQEN",
699            "aliases": [
700                "ali-mortazavi:b01_nanopore_13H_bulk_k63_mm39"
701            ],
702            "file_set_type": "principal analysis",
703            "lab": {
704                "title": "Ali Mortazavi, UCI"
705            },
706            "status": "in progress",
707            "summary": "Parse SPLiT-seq: transcript quantifications"
708        }
709    ],
710    "institutional_certificates": [],
711    "lab": {
712        "@id": "/labs/ali-mortazavi/",
713        "title": "Ali Mortazavi, UCI"
714    },
715    "lower_bound_age": 72,
716    "lower_bound_age_in_hours": 1728,
717    "multiplexed_in": [
718        {
719            "@id": "/multiplexed-samples/IGVFSM1676SYRC/",
720            "accession": "IGVFSM1676SYRC",
721            "status": "released"
722        },
723        {
724            "@id": "/multiplexed-samples/IGVFSM1955RVUC/",
725            "accession": "IGVFSM1955RVUC",
726            "status": "released"
727        },
728        {
729            "@id": "/multiplexed-samples/IGVFSM8093RPKR/",
730            "accession": "IGVFSM8093RPKR",
731            "status": "released"
732        },
733        {
734            "@id": "/multiplexed-samples/IGVFSM9603DIDI/",
735            "accession": "IGVFSM9603DIDI",
736            "status": "released"
737        },
738        {
739            "@id": "/multiplexed-samples/IGVFSM6546CQJB/",
740            "accession": "IGVFSM6546CQJB",
741            "status": "released"
742        },
743        {
744            "@id": "/multiplexed-samples/IGVFSM8722YQAW/",
745            "accession": "IGVFSM8722YQAW",
746            "status": "released"
747        },
748        {
749            "@id": "/multiplexed-samples/IGVFSM6958ESMJ/",
750            "accession": "IGVFSM6958ESMJ",
751            "status": "released"
752        },
753        {
754            "@id": "/multiplexed-samples/IGVFSM2294BOOU/",
755            "accession": "IGVFSM2294BOOU",
756            "status": "released"
757        }
758    ],
759    "origin_of": [],
760    "parts": [],
761    "pooled_in": [],
762    "release_timestamp": "2024-06-11T17:07:00.664986+00:00",
763    "sample_terms": [
764        {
765            "@id": "/sample-terms/NTR_0000646/",
766            "status": "released",
767            "term_name": "left cerebral cortex"
768        }
769    ],
770    "schema_version": "21",
771    "sex": "male",
772    "sorted_fractions": [],
773    "sources": [
774        {
775            "@id": "/sources/jackson-labs/",
776            "status": "released",
777            "title": "The Jackson Laboratory"
778        }
779    ],
780    "status": "released",
781    "submitted_by": {
782        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
783        "title": "Diane Trout"
784    },
785    "summary": "Mus musculus CAST/EiJ (male, 72 days) left cerebral cortex tissue",
786    "taxa": "Mus musculus",
787    "upper_bound_age": 72,
788    "upper_bound_age_in_hours": 1728,
789    "uuid": "edd70761-6e0b-46d7-bda1-e34c5a3b2266",
790    "virtual": false
791}